当前解析结果
SmilChr07G003529| 统一新 Gene ID | SmilChr07G003529 |
|---|---|
| 名称 | SmilChr07G003529 |
| 描述 | uncharacterized SmilChr07G003529 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 40571596 - 40574337 / - |
| NCBI Gene ID | LOC130992947 |
|---|---|
| GeneID | 130992947 |
| locus_tag | - |
| NCBI Name | LOC130992947 |
| 原始查询 | LOC130992947 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BTB/POZ domain protein [Source:NCBI gene (formerly Entrezgene);Acc:824242]; symbol=AT3G50780; hit=AT3G50780; species=arabidopsis; confidence=medium |
| 产物 | BTB/POZ domain protein [Source:NCBI gene (formerly Entrezgene);Acc:824242]; symbol=AT3G50780; hit=AT3G50780; species=arabidopsis; confidence=medium |
| Arabidopsis | AT3G50780 (AT3G50780)BTB/POZ domain protein [Source:NCBI gene (formerly Entrezgene);Acc:824242] identity=61.5; qcov=0.491; evalue=1.81e-28; confidence=medium |
| Rice | Os03g0769400 (OSJNBb0106M04.9)- identity=57.8; qcov=0.491; evalue=5.95e-24; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992947 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057773656.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057773656.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057773656.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773656.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773656.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:40571643 |
A |
AT |
1bp_insertion | frameshift_variant | 2 | B109,C21 |
Chr7:40571643 |
A |
AT |
1bp_insertion | CDS_variant | 2 | B109,C21 |
Chr7:40571697 |
T |
TC |
1bp_insertion | frameshift_variant | 27 | A1,A13,A15,A19,B1,B10,B102,B136,B31,B34,B36,B38,B63,B71,B86,B96,C19,C23,C25,C28,C30,C47,C54,C61,C74,C75,D8 |
Chr7:40571707 |
G |
GC |
1bp_insertion | frameshift_variant | 16 | A21,A23,A25,B111,B125,B18,B48,B62,B73,B88,B90,C20,C65,C67,C7,C76 |
Chr7:40571710 |
A |
ACC |
2bp_insertion | frameshift_variant | 16 | A21,A23,A25,B111,B125,B18,B48,B62,B73,B88,B90,C20,C65,C67,C7,C76 |
Chr7:40571715 |
TA |
T |
1bp_deletion | frameshift_variant | 16 | A21,A23,A25,B111,B125,B18,B48,B62,B73,B88,B90,C20,C65,C67,C7,C76 |
Chr7:40571778 |
ACC |
A |
2bp_deletion | frameshift_variant | 11 | A21,A23,B111,B125,B42,B48,B88,C20,C67,C7,C76 |
Chr7:40571922 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | D11 |
Chr7:40571922 |
G |
GA |
1bp_insertion | CDS_variant | 1 | D11 |
Chr7:40571930 |
G |
GT |
1bp_insertion | frameshift_variant | 60 | A14,A18,A19,A5,A8,B106,B11,B111,B113,B114,B123,B135,B16,B17,B23,B31,B32,B44,B49,B55,B56,B58,B6,B60,B69,B7,B71,B73,B74,B8,B88,B95,B96,C1,C10,C12,C18,C19,C27,C3,C30,C4,C41,C43,C54,C56,C57,C58,C6,C60,C62,C70,C71,C72,C78,C80,C86,D6,D7,D9 |
Chr7:40571958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B31,D6 |
Chr7:40571969 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。