Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G003529

染色体: Chr07 坐标: 40571596-40574337 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G003529
名称SmilChr07G003529
描述uncharacterized SmilChr07G003529
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向40571596 - 40574337 / -

ID 对照

NCBI Gene IDLOC130992947
GeneID130992947
locus_tag-
NCBI NameLOC130992947
原始查询LOC130992947

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述BTB/POZ domain protein [Source:NCBI gene (formerly Entrezgene);Acc:824242]; symbol=AT3G50780; hit=AT3G50780; species=arabidopsis; confidence=medium
产物BTB/POZ domain protein [Source:NCBI gene (formerly Entrezgene);Acc:824242]; symbol=AT3G50780; hit=AT3G50780; species=arabidopsis; confidence=medium
ArabidopsisAT3G50780 (AT3G50780)
BTB/POZ domain protein [Source:NCBI gene (formerly Entrezgene);Acc:824242]
identity=61.5; qcov=0.491; evalue=1.81e-28; confidence=medium
RiceOs03g0769400 (OSJNBb0106M04.9)
-
identity=57.8; qcov=0.491; evalue=5.95e-24; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130992947

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.60000 XP_057773656.1
2 Cytoplasm 细胞质 0.60000 XP_057773656.1
3 Cytosol 细胞质基质 0.20000 XP_057773656.1
4 Chromosome 染色体 0.00000 XP_057773656.1
5 Centromere 着丝粒 0.00000 XP_057773656.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:40571643 A AT 1bp_insertion frameshift_variant 2 B109,C21
Chr7:40571643 A AT 1bp_insertion CDS_variant 2 B109,C21
Chr7:40571697 T TC 1bp_insertion frameshift_variant 27 A1,A13,A15,A19,B1,B10,B102,B136,B31,B34,B36,B38,B63,B71,B86,B96,C19,C23,C25,C28,C30,C47,C54,C61,C74,C75,D8
Chr7:40571707 G GC 1bp_insertion frameshift_variant 16 A21,A23,A25,B111,B125,B18,B48,B62,B73,B88,B90,C20,C65,C67,C7,C76
Chr7:40571710 A ACC 2bp_insertion frameshift_variant 16 A21,A23,A25,B111,B125,B18,B48,B62,B73,B88,B90,C20,C65,C67,C7,C76
Chr7:40571715 TA T 1bp_deletion frameshift_variant 16 A21,A23,A25,B111,B125,B18,B48,B62,B73,B88,B90,C20,C65,C67,C7,C76
Chr7:40571778 ACC A 2bp_deletion frameshift_variant 11 A21,A23,B111,B125,B42,B48,B88,C20,C67,C7,C76
Chr7:40571922 G GA 1bp_insertion frameshift_variant 1 D11
Chr7:40571922 G GA 1bp_insertion CDS_variant 1 D11
Chr7:40571930 G GT 1bp_insertion frameshift_variant 60 A14,A18,A19,A5,A8,B106,B11,B111,B113,B114,B123,B135,B16,B17,B23,B31,B32,B44,B49,B55,B56,B58,B6,B60,B69,B7,B71,B73,B74,B8,B88,B95,B96,C1,C10,C12,C18,C19,C27,C3,C30,C4,C41,C43,C54,C56,C57,C58,C6,C60,C62,C70,C71,C72,C78,C80,C86,D6,D7,D9
Chr7:40571958 G A EMS_canonical_SNV CDS_variant 2 B31,D6
Chr7:40571969 C T EMS_canonical_SNV CDS_variant 1 B58

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XR_009091509.1
CTTATCTCTCCTGCGCCCCCTCCCATCTCACTATCTCTCTCTCAGAATTTCATCCCTCTCTCTCAGCCCTAGGTCCCGCCGCCACAGCCACTTTGCGCCATCGCCGGAGCCCGGCAGTTCCATCGCGGCCAACCGCCATCTTCTCCCTCCTCTCCCTTTTCTTTCTATCACTTTCTCTCTTCTCACACCCAACGCACACACCCAGATCCGCACTCAAATCAGCGGCGTGGGTGCCGCCGCTCGTCCTTCCCGGCAAAGCG...
XR_009091508.1
TGTTATTTGCTTATACCAAATAACTAGGCCTATAATTATTGATCCTGGACTTTATCACTCAAAGAAATCTGGTGTTTTCTGGGCCAAAGAGAAAAGATCGTTGCCTGCTTCTTTCAAGTTATTCACTGGTGGCTAAGGAGAGTGCTGATGTTATAATTTTAGATGACAATTTCTCCACCATTGTAACATGCAACTTTTTTCAGAAAGTCAGCGAACAGATTGGTTACATGACTTGCATCCAATATTGTTTAGAGTACTTG...

CDS

1 records

下载 CDS FASTA
LOC130992947
ATGAACCATGATACTTACTACTCGGTTTATATTTGCCAGGTGGCTAAGGAGAGTGCTGATGTTATAATTTTAGATGACAATTTCTCCACCATTGTAACATGCAACTTTTTTCAGAAAGTCAGCGAACAGATTGGTTACATGACTTGCATCCAATATTGTTTAGAGTACTTGGAAGCCGTCCCTTGGGTGGGACAAGAGGAGGAAGAGAAAGTGGTTTCTATAGTCTCCCGTCTTGAAGGTGAGGGCATCGGGGTGAAGCC...

Protein

1 records

下载 Protein FASTA
XP_057773656.1
MNHDTYYSVYICQVAKESADVIILDDNFSTIVTCNFFQKVSEQIGYMTCIQYCLEYLEAVPWVGQEEEEKVVSIVSRLEGEGIGVKPVLKRVSPENPTPPNDTLSHILELVLKSREAKDRKPPRFRCRHRRTRPRLPEYKSQPKSKSIKIQMLDEICDVGCNIRLIMFE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器