Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G003583

染色体: Chr07 坐标: 41866980-41869047 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G003583
名称SmilChr07G003583
描述uncharacterized SmilChr07G003583
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向41866980 - 41869047 / -

ID 对照

NCBI Gene IDLOC130992987
GeneID130992987
locus_tag-
NCBI NameLOC130992987
原始查询LOC130992987

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述confidence=no_hit
产物confidence=no_hit
Arabidopsis-
-
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130992987

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057773681.1
2 Cytoplasm 细胞质 1.00000 XP_057773683.1
3 Chromosome 染色体 0.20000 XP_057773682.1
4 Centromere 着丝粒 0.00000 XP_057773682.1
5 Chromatin 染色质 0.00000 XP_057773682.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:41867134 GT G 1bp_deletion frameshift_variant 3 B44,B65,D6
Chr7:41867134 GT G 1bp_deletion CDS_variant 3 B44,B65,D6
Chr7:41867285 G A EMS_canonical_SNV stop_gained 1 A8
Chr7:41867285 G A EMS_canonical_SNV CDS_variant 1 A8
Chr7:41867290 G A EMS_canonical_SNV CDS_variant 2 B128,C74
Chr7:41867295 C T EMS_canonical_SNV CDS_variant 1 C74
Chr7:41867349 C T EMS_canonical_SNV CDS_variant 2 B71,D8
Chr7:41867357 C T EMS_canonical_SNV CDS_variant 1 C65
Chr7:41867406 T TA 1bp_insertion frameshift_variant 29 A2,A5,B104,B106,B11,B114,B13,B17,B2,B20,B25,B29,B37,B52,B60,B71,B77,B8,B86,C17,C2,C21,C30,C39,C58,C6,C62,C7,C78
Chr7:41867592 GT G 1bp_deletion frameshift_variant 4 C19,C26,C82,C83
Chr7:41867592 GT G 1bp_deletion CDS_variant 4 C19,C26,C82,C83
Chr7:41867595 G A EMS_canonical_SNV CDS_variant 1 C72

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057917700.1
CTCATAAATAGTTAATTCAGCCTACACTTTTCAGTCATCTATGAACTTATAAATATTTATTGCGCTTTTTAAGGTGCCAGTTACATTCGAAACGCCCCCTTCGTCAACCAAGCAAAGTGCTGTACAGGTGAACTTCAATGCTGCTAAGATAGCGAACAAAGAGAACCAAGTGTTTTGTACGCCATCTAAAACGACAGGAAATAGGTTTCGTACAGCTCTTGTTCCATTGGATGAGAATTCATCAGAACTGGCATCTAATG...
XM_057917699.1
ATGATACACATTTTTTATATCAATTAAGAGTTTTGCATTTTAACTTTAATGTTTCATTATTTCAATCAGACAGGAAATAGGTTTCGTACAGCTCTTGTTCCATTGGATGAGAATTCATCAGAACTGGCATCTAATGTCAATGGAGGGGAATCACCAATCTATGGATGTGTGAGGAAAGACTTTCCTGTTAGGAAATTGCATTACAGATCTTACGATATTGATAATATTATATGCTGCACTACGCCTCTAAGCATTAGAGA...

CDS

3 records

下载 CDS FASTA
LOC130992987
ATGTTTCATTATTTCAATCAGACAGGAAATAGGTTTCGTACAGCTCTTGTTCCATTGGATGAGAATTCATCAGAACTGGCATCTAATGTCAATGGAGGGGAATCACCAATCTATGGATGTGTGAGGAAAGACTTTCCTGTTAGGAAATTGCATTACAGATCTTACGATATTGATAATATTATATGCTGCACTACGCCTCTAAGCATTAGAGAGAAAGCCATTGCCATGTATTGTATGCATAGTCATTTTCTTCCTGAAGG...
LOC130992987
ATGTTTCATTATTTCAATCAGACAGGAAATAGGTTTCGTACAGCTCTTGTTCCATTGGATGAGAATTCATCAGAACTGGCATCTAATGTCAATGGAGGGGAATCACCAATCTATGGATGTGTGAGGAAAGACTTTCCTGTTAGGAAATTGCATTACAGATCTTACGATATTGATAATATTATATGCTGCACTACGCCTCTAAGCATTAGAGAGAAAGCCATTGCCATGTATTGTATGCATAGTCATTTTCTTCCTGAAGG...

Protein

3 records

下载 Protein FASTA
XP_057773681.1
MFHYFNQTGNRFRTALVPLDENSSELASNVNGGESPIYGCVRKDFPVRKLHYRSYDIDNIICCTTPLSIREKAIAMYCMHSHFLPEGKVLFMFKDIELCIFDLVSLRIGSVVQPSIINAWSIILNHIFVAGSSQKPVRFFASTDIYIDCISQPGMSYVSRRKLFFDGMDRELRLYQTNSLGSIDMVIICKNSLRYFVIKSQIYLFASQFFFPVFPDDQPYVLCFDLPKEVIFIIDTSVEVNKHPVSSNYNDLCHILRSLL...
XP_057773682.1
MFHYFNQTGNRFRTALVPLDENSSELASNVNGGESPIYGCVRKDFPVRKLHYRSYDIDNIICCTTPLSIREKAIAMYCMHSHFLPEGKVLFMFKDIELCIFDLVSLRIGSVVQPSIINAWSIILNHIFVAGSSQKPVRFFASTDIYIDCISQPGMSYVSRRKLFFDGMDRELRLYQTNSLGSIDMFFFPVFPDDQPYVLCFDLPKEVIFIIDTSVEVNKHPVSSNYNDLCHILRSLLAEFLNNNREHLSSASVSKSVIEV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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