当前解析结果
SmilChr07G003392| 统一新 Gene ID | SmilChr07G003392 |
|---|---|
| 名称 | SmilChr07G003392 |
| 描述 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 36762631 - 36773939 / - |
| NCBI Gene ID | LOC130992995 |
|---|---|
| GeneID | 130992995 |
| locus_tag | - |
| NCBI Name | LOC130992995 |
| 原始查询 | LOC130992995 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like |
| 产物 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like |
| Arabidopsis | AT5G23430 (AT5G23430)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832409] identity=57.3; qcov=1.07; evalue=0; confidence=high |
| Rice | Os04g0677700 (OsKTN80b)- identity=71.4; qcov=0.588; evalue=0; confidence=medium |
| GO | GO:0007019 (microtubule depolymerization); GO:0008017 (microtubule binding); GO:0008352 (katanin complex); GO:0051013 (microtubule severing) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF08662 (eIF2A); PF12894 (ANAPC4_WD40); PF13925 (Katanin_con80) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992995 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Phragmoplast | Phragmoplast | 1.00000 | XP_057773698.1 |
| 2 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057773699.1 |
| 3 | Spindle | Spindle | 0.60000 | XP_057773699.1 |
| 4 | Spindle pole | Spindle pole | 0.40000 | XP_057773698.1 |
| 5 | Chromosome | 染色体 | 0.20000 | XP_057773698.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:36763304 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B134,D9 |
Chr7:36763323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,D9 |
Chr7:36763445 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B25,B29,B71,C6 |
Chr7:36765672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C61 |
Chr7:36765701 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr7:36766385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B52,B67,B86 |
Chr7:36767504 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:36767650 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B25,B29,B71,C6 |
Chr7:36767662 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C65,D11 |
Chr7:36767689 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B25,B29,B71,C6 |
Chr7:36767959 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:36768004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B52,B67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773698.1PF00400
WD40 11-46 aa
PF00400
WD40 54-89 aa
PF08662
eIF2A 68-182 aa
PF00400
WD40 94-131 aa
PF00400
WD40 137-173 aa
PF12894
ANAPC4_WD40 144-192 aa
PF00400
WD40 177-215 aa
PF00400
WD40 229-247 aa
PF13925
Katanin_con80 623-764 aa
XP_057773699.1PF00400
WD40 11-46 aa
PF00400
WD40 54-89 aa
PF08662
eIF2A 68-182 aa
PF00400
WD40 94-131 aa
PF00400
WD40 137-173 aa
PF12894
ANAPC4_WD40 145-192 aa
PF00400
WD40 177-215 aa
PF00400
WD40 229-247 aa
PF13925
Katanin_con80 623-780 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773698.1 |
Pfam | PF00400 |
WD40 | Repeat | 11 | 46 | 1.4e-54 | 180.9 | WD domain, G-beta repeat |
XP_057773698.1 |
Pfam | PF00400 |
WD40 | Repeat | 54 | 89 | 1.4e-54 | 180.9 | WD domain, G-beta repeat |
XP_057773698.1 |
Pfam | PF08662 |
eIF2A | Repeat | 68 | 182 | 3.8e-11 | 44.0 | Eukaryotic translation initiation factor eIF2A |
XP_057773698.1 |
Pfam | PF00400 |
WD40 | Repeat | 94 | 131 | 1.4e-54 | 180.9 | WD domain, G-beta repeat |
XP_057773698.1 |
Pfam | PF00400 |
WD40 | Repeat | 137 | 173 | 1.4e-54 | 180.9 | WD domain, G-beta repeat |
XP_057773698.1 |
Pfam | PF12894 |
ANAPC4_WD40 | Repeat | 144 | 192 | 4.2e-17 | 62.9 | Anaphase-promoting complex subunit 4 WD40 domain |
XP_057773698.1 |
Pfam | PF00400 |
WD40 | Repeat | 177 | 215 | 1.4e-54 | 180.9 | WD domain, G-beta repeat |
XP_057773698.1 |
Pfam | PF00400 |
WD40 | Repeat | 229 | 247 | 1.4e-54 | 180.9 | WD domain, G-beta repeat |
XP_057773698.1 |
Pfam | PF13925 |
Katanin_con80 | Domain | 623 | 764 | 3e-48 | 164.7 | con80 domain of Katanin |
XP_057773699.1 |
Pfam | PF00400 |
WD40 | Repeat | 11 | 46 | 1.1e-54 | 181.2 | WD domain, G-beta repeat |
XP_057773699.1 |
Pfam | PF00400 |
WD40 | Repeat | 54 | 89 | 1.1e-54 | 181.2 | WD domain, G-beta repeat |
XP_057773699.1 |
Pfam | PF08662 |
eIF2A | Repeat | 68 | 182 | 3.6e-11 | 44.0 | Eukaryotic translation initiation factor eIF2A |
XP_057773699.1 |
Pfam | PF00400 |
WD40 | Repeat | 94 | 131 | 1.1e-54 | 181.2 | WD domain, G-beta repeat |
XP_057773699.1 |
Pfam | PF00400 |
WD40 | Repeat | 137 | 173 | 1.1e-54 | 181.2 | WD domain, G-beta repeat |
XP_057773699.1 |
Pfam | PF12894 |
ANAPC4_WD40 | Repeat | 145 | 192 | 3.6e-17 | 63.1 | Anaphase-promoting complex subunit 4 WD40 domain |
XP_057773699.1 |
Pfam | PF00400 |
WD40 | Repeat | 177 | 215 | 1.1e-54 | 181.2 | WD domain, G-beta repeat |
XP_057773699.1 |
Pfam | PF00400 |
WD40 | Repeat | 229 | 247 | 1.1e-54 | 181.2 | WD domain, G-beta repeat |
XP_057773699.1 |
Pfam | PF13925 |
Katanin_con80 | Domain | 623 | 780 | 4.2e-53 | 180.4 | con80 domain of Katanin |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。