Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000430

染色体: Chr07 坐标: 2997062-3001632 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000430
名称SmilChr07G000430
描述uncharacterized SmilChr07G000430
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向2997062 - 3001632 / -

ID 对照

NCBI Gene IDLOC130993045
GeneID130993045
locus_tag-
NCBI NameLOC130993045
原始查询LOC130993045

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818872]; symbol=AT2G42720; hit=AT2G42720; species=arabidopsis; confidence=low
产物FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818872]; symbol=AT2G42720; hit=AT2G42720; species=arabidopsis; confidence=low
ArabidopsisAT2G42720 (AT2G42720)
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818872]
identity=26.2; qcov=0.663; evalue=1.72e-06; confidence=low
Rice-
-
GOGO:0005515 (protein binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130993045

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057773748.1
2 Cytoplasm 细胞质 0.40000 XP_057773748.1
3 Chromosome 染色体 0.00000 XP_057773748.1
4 Centromere 着丝粒 0.00000 XP_057773748.1
5 Chromatin 染色质 0.00000 XP_057773748.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:2997062 C T EMS_canonical_SNV CDS_variant 4 B89,C20,C6,C9
Chr7:2997137 G A EMS_canonical_SNV CDS_variant 2 B78,C1
Chr7:2997170 C T EMS_canonical_SNV CDS_variant 2 C33,C46
Chr7:2997175 TA T 1bp_deletion frameshift_variant 7 B107,B23,B68,B78,C1,C5,C54
Chr7:2997213 G A EMS_canonical_SNV CDS_variant 3 B68,B78,C1
Chr7:2997228 AC A 1bp_deletion frameshift_variant 1 B99
Chr7:2997228 AC A 1bp_deletion CDS_variant 1 B99
Chr7:2997321 AT A 1bp_deletion frameshift_variant 25 A20,A21,A8,B1,B10,B101,B107,B121,B122,B23,B46,B59,B69,B72,B75,B90,B92,C21,C28,C3,C38,C50,C54,C55,C83
Chr7:2997337 C T EMS_canonical_SNV CDS_variant 2 B127,B66
Chr7:2997357 G A EMS_canonical_SNV CDS_variant 5 B107,B23,B75,C5,C54
Chr7:2997359 G A EMS_canonical_SNV CDS_variant 3 B78,C1,D11
Chr7:2997365 G A EMS_canonical_SNV CDS_variant 2 B78,C1

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057917765.1
ATGGCGAATCAACTTCCTGAAGAAAGTATTCAGCGCATTCAATCCTTTCTAAACGAAGAAGAAGCTGCTCGAACCGCCATCCTCTGCAAGTCTTGGTACGGCGCGTGGCTCACACGCCCCGTTCTCTTTTTCAAACAAAGCCTCTTTCGAGGAGGCGCCGACGAGTTTCACGAATTCACAACCAACACTATTCAGAGGTACAGAGATCTCAACCTAAAGATCCACGCTTTGACTCTATCGATCTCGGAAGATGCCTCTCT...

CDS

1 records

下载 CDS FASTA
LOC130993045
ATGGCGAATCAACTTCCTGAAGAAAGTATTCAGCGCATTCAATCCTTTCTAAACGAAGAAGAAGCTGCTCGAACCGCCATCCTCTGCAAGTCTTGGTACGGCGCGTGGCTCACACGCCCCGTTCTCTTTTTCAAACAAAGCCTCTTTCGAGGAGGCGCCGACGAGTTTCACGAATTCACAACCAACACTATTCAGAGGTACAGAGATCTCAACCTAAAGATCCACGCTTTGACTCTATCGATCTCGGAAGATGCCTCTCT...

Protein

1 records

下载 Protein FASTA
XP_057773748.1
MANQLPEESIQRIQSFLNEEEAARTAILCKSWYGAWLTRPVLFFKQSLFRGGADEFHEFTTNTIQRYRDLNLKIHALTLSISEDASLADELMARATELGAVDLDITMSAWNKRFLFSLRSETLATLCLVGSILVDPTHTSCSKLKSLTLSLIDLRHDFDLISKFPLLETLKFDGLRLMSRSGEFRKLKLKLLTPNFQHKKLEYLYLGNLIVHGDLFASAAAFSEFPSLKELVISDCDGFKDIRICSDSLERVSVWLEEER...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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