当前解析结果
SmilChr01G003492| 统一新 Gene ID | SmilChr01G003492 |
|---|---|
| 名称 | SmilChr01G003492 |
| 描述 | ethylene-responsive transcription factor ERF110-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 53492770 - 53495252 / + |
| NCBI Gene ID | LOC130993050 |
|---|---|
| GeneID | 130993050 |
| locus_tag | - |
| NCBI Name | LOC130993050 |
| 原始查询 | LOC130993050 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ethylene-responsive transcription factor ERF110-like |
| 产物 | ethylene-responsive transcription factor ERF110-like |
| Arabidopsis | AT5G13330 (Rap2.6L)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:831174] identity=50.4; qcov=0.468; evalue=4.91e-32; confidence=medium |
| Rice | Os12g0168100 (DERF8)- identity=45; qcov=0.667; evalue=2.17e-33; confidence=medium |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription); GO:0009873 (ethylene-activated signaling pathway) |
| KEGG | - |
| Pfam | PF00847 (AP2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993050 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773754.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057773754.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057773754.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057773754.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057773754.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:53493356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:53493491 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B2,B35,B69,C60 |
Chr1:53493519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:53494584 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B115 |
Chr1:53494672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,B26,C52 |
Chr1:53494687 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,B26,C52 |
Chr1:53494730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,C33,C36,C81,C84 |
Chr1:53494741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B24,B69,C15 |
Chr1:53494758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B46,C61,C82 |
Chr1:53494836 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr1:53494847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr1:53494944 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057773754.1PF00847
AP2 118-167 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773754.1 |
Pfam | PF00847 |
AP2 | Domain | 118 | 167 | 2.1e-14 | 54.3 | AP2 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。