当前解析结果
SmilChr07G003654| 统一新 Gene ID | SmilChr07G003654 |
|---|---|
| 名称 | SmilChr07G003654 |
| 描述 | cell division cycle 5-like protein |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 43453736 - 43459589 / + |
| NCBI Gene ID | LOC130993051 |
|---|---|
| GeneID | 130993051 |
| locus_tag | - |
| NCBI Name | LOC130993051 |
| 原始查询 | LOC130993051 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cell division cycle 5-like protein |
| 产物 | cell division cycle 5-like protein |
| Arabidopsis | AT1G09770 (CDC5)cell division cycle 5 [Source:NCBI gene (formerly Entrezgene);Acc:837506] identity=71; qcov=0.888; evalue=0; confidence=high |
| Rice | Os04g0348300- identity=73.8; qcov=0.862; evalue=0; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0000974 (Prp19 complex); GO:0005681 (spliceosomal complex) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00249 (Myb_DNA-binding); PF11831 (Myb_Cef); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993051 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773753.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057773753.1 |
| 3 | Chromosome | 染色体 | 0.60000 | XP_057773753.1 |
| 4 | Chromatin | 染色质 | 0.20000 | XP_057773753.1 |
| 5 | Nuclear speckle | 核斑点 | 0.20000 | XP_057773753.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:43455040 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,A18,B66 |
Chr7:43455090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C49,C79,D1 |
Chr7:43455645 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:43455724 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr7:43455772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,B33,C26 |
Chr7:43456047 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C10,C23,C55 |
Chr7:43456084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C55 |
Chr7:43456096 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C55 |
Chr7:43456097 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C55 |
Chr7:43456106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C10,C55 |
Chr7:43456121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C10,C55 |
Chr7:43456146 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C10,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773753.1PF00249
Myb_DNA-binding 8-53 aa
PF13921
Myb_DNA-bind_6 10-70 aa
PF00249
Myb_DNA-binding 59-103 aa
PF13921
Myb_DNA-bind_6 62-111 aa
PF11831
Myb_Cef 406-652 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773753.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 8 | 53 | 4.5e-25 | 88.2 | Myb-like DNA-binding domain |
XP_057773753.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 10 | 70 | 1.4e-22 | 80.4 | Myb-like DNA-binding domain |
XP_057773753.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 59 | 103 | 4.5e-25 | 88.2 | Myb-like DNA-binding domain |
XP_057773753.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 62 | 111 | 1.4e-22 | 80.4 | Myb-like DNA-binding domain |
XP_057773753.1 |
Pfam | PF11831 |
Myb_Cef | Family | 406 | 652 | 9.6e-57 | 192.9 | pre-mRNA splicing factor component |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。