当前解析结果
SmilChr07G000515| 统一新 Gene ID | SmilChr07G000515 |
|---|---|
| 名称 | SmilChr07G000515 |
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3620442 - 3622105 / + |
| NCBI Gene ID | LOC130993061 |
|---|---|
| GeneID | 130993061 |
| locus_tag | - |
| NCBI Name | LOC130993061 |
| 原始查询 | LOC130993061 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 产物 | F-box/LRR-repeat protein At3g26922-like |
| Arabidopsis | AT3G26922 (AT3G26922)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:7922367] identity=30.2; qcov=0.554; evalue=6.31e-22; confidence=low |
| Rice | Os07g0285200 (OsFbox363)- identity=30.7; qcov=0.474; evalue=6.71e-13; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993061 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773763.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057773763.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057773763.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057773763.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057773763.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3620490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C33,C46 |
Chr7:3620567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr7:3620568 |
A |
ACG |
2bp_insertion | frameshift_variant | 1 | A23 |
Chr7:3620568 |
A |
ACG |
2bp_insertion | CDS_variant | 1 | A23 |
Chr7:3620589 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C69 |
Chr7:3620589 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C69 |
Chr7:3620650 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr7:3620735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B117,B72,C83 |
Chr7:3620738 |
CG |
C |
1bp_deletion | frameshift_variant | 15 | A9,B100,B102,B139,B22,B44,B50,B57,B89,B97,C36,C38,C44,C53,C6 |
Chr7:3620767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B135,C64,C78,C85 |
Chr7:3620816 |
G |
GCT |
2bp_insertion | frameshift_variant | 14 | B115,B120,B127,B135,B137,B16,B61,B64,B66,B88,C29,C36,C46,D2 |
Chr7:3620864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B14,B51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773763.1PF00646
F-box 26-65 aa
PF23622
LRR_At1g61320_AtMIF1 91-426 aa
PF24758
LRR_At5g56370 111-249 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773763.1 |
Pfam | PF00646 |
F-box | Domain | 26 | 65 | 3.6e-07 | 30.5 | F-box domain |
XP_057773763.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 91 | 426 | 3.7e-16 | 60.2 | At1g61320/AtMIF1, LRR domain |
XP_057773763.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 111 | 249 | 4.2e-14 | 53.5 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。