Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004739`

染色体: Chr07 坐标: 60245107-60248788 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004739`
名称	SmilChr07G004739
描述	uncharacterized SmilChr07G004739
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	60245107 - 60248788 / `+`

ID 对照

NCBI Gene ID	`LOC130993063`
GeneID	`130993063`
locus_tag	`-`
NCBI Name	`LOC130993063`
原始查询	`LOC130993063`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	nuclear speckle splicing regulatory-like protein (DUF2040) [Source:NCBI gene (formerly Entrezgene);Acc:817271]; symbol=AT2G27285; hit=AT2G27285; species=arabidopsis; confidence=high
产物	nuclear speckle splicing regulatory-like protein (DUF2040) [Source:NCBI gene (formerly Entrezgene);Acc:817271]; symbol=AT2G27285; hit=AT2G27285; species=arabidopsis; confidence=high
Arabidopsis	`AT2G27285` (AT2G27285) nuclear speckle splicing regulatory-like protein (DUF2040) [Source:NCBI gene (formerly Entrezgene);Acc:817271] identity=49; qcov=1.01; evalue=1.74e-80; confidence=high
Rice	`Os04g0440000` (OJ000114_01.13) - identity=46.6; qcov=1.01; evalue=9.24e-58; confidence=high
GO	GO:0000381 (regulation of alternative mRNA splicing, via spliceosome)
KEGG	-
Pfam	PF09745 (NSRP1_N)
InterPro	-
eggNOG	-
NR	GeneID:130993063

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773764.1`
2	Nucleoplasm	核质	1.00000	`XP_057773764.1`
3	Nuclear speckle	核斑点	0.60000	`XP_057773764.1`
4	Nuclear body	核内小体	0.20000	`XP_057773764.1`
5	Cytoplasm	细胞质	0.20000	`XP_057773765.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:60246274`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B33
`Chr7:60246274`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr7:60246282`	`C`	`CCA`	2bp_insertion	frameshift_variant	85	A18,A25,A4,A6,B100,B101,B104,B105,B107,B110,B112,B113,B119,B120,B124,B126,B13,B135,B136,B138,B15,B21,B25,B26,B27,B3,B31,B35,B36,B37,B4,B40,B41,B42,B43,B47,B49,B50,B54,B56,B59,B65,B7,B73,B8,B83,B85,B86,B87,B89,B93,B94,B96,C10,C11,C13,C15,C18,C23,C24,C25,C36,C37,C39,C4,C40,C43,C5,C54,C56,C57,C58,C60,C62,C69,C72,C73,C75,C76,C77,C79,C8,C80,D10,D9
`Chr7:60246629`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A22,B104,B126,C40,D11
`Chr7:60246861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,C5
`Chr7:60247361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C48
`Chr7:60248131`	`T`	`TG`	1bp_insertion	frameshift_variant	3	B26,B5,B81
`Chr7:60248131`	`T`	`TG`	1bp_insertion	CDS_variant	3	B26,B5,B81
`Chr7:60248200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr7:60248208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,C36,C39,C6
`Chr7:60248214`	`GCT`	`G`	2bp_deletion	frameshift_variant	33	A14,A2,A21,A23,A5,B101,B105,B106,B112,B129,B131,B16,B20,B26,B27,B33,B36,B41,B55,B68,B69,B85,B90,B92,C10,C40,C54,C58,C61,C73,C80,C83,D5
`Chr7:60248227`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773764.1

362 aa

181

362

NSRP1_N

PF09745 NSRP1_N 84-199 aa

XP_057773765.1

332 aa

166

332

NSRP1_N

PF09745 NSRP1_N 54-169 aa

XP_057773766.1

332 aa

166

332

NSRP1_N

PF09745 NSRP1_N 54-169 aa

XP_057773767.1

332 aa

166

332

NSRP1_N

PF09745 NSRP1_N 54-169 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773764.1`	Pfam	`PF09745`	NSRP1_N	Coiled-coil	84	199	2.2e-37	128.5	Nuclear speckle splicing regulatory protein 1, N-terminal
`XP_057773765.1`	Pfam	`PF09745`	NSRP1_N	Coiled-coil	54	169	1.8e-37	128.8	Nuclear speckle splicing regulatory protein 1, N-terminal
`XP_057773766.1`	Pfam	`PF09745`	NSRP1_N	Coiled-coil	54	169	1.8e-37	128.8	Nuclear speckle splicing regulatory protein 1, N-terminal
`XP_057773767.1`	Pfam	`PF09745`	NSRP1_N	Coiled-coil	54	169	1.8e-37	128.8	Nuclear speckle splicing regulatory protein 1, N-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057917781.1
CAAAACATGACTGCTTAGTATTAGTAGTAAATAAAGAAATAAATTCCTCCCTGGCCCTCCCTCTGCAGAATCGTCTCGGTCTCGATCTCTCTCCAATTCCGGCTTCTCAAAATTTCCGGCGAAATTCACCAATCTACCAGCTCAGCCCCTTTCTCCCTTATTCTGATTTACTTGTCTTTGTTGGAGACCTATTATTAGCACAATCAAATTTTGGCCTCTTGCTAGGTTCAACTGATTTGGAACAGGTTAGAATCAATGCC...

XM_057917783.1
CAAAACATGACTGCTTAGTATTAGTAGTAAATAAAGAAATAAATTCCTCCCTGGCCCTCCCTCTGCAGAATCGTCTCGGTCTCGATCTCTCTCCAATTCCGGCTTCTCAAAATTTCCGGCGAAATTCACCAATCTACCAGCTCAGCCCCTTTCTCCCTTATTCTGGCTTTGAGGCTTGGCAGTTTGAAGAGCAGCTTGAAATTAGAACAGAAAATGTCAAAGTACGGGTTGCAGCTTAGAGTTAAACCACAGCAGAAACA...

CDS

4 records

下载 CDS FASTA

LOC130993063
ATGGACTGTTTATGGACTTATTCCACAAATTATGTCGTCATGGCTTTGAGGCTTGGCAGTTTGAAGAGCAGCTTGAAATTAGAACAGAAAATGTCAAAGTACGGGTTGCAGCTTAGAGTTAAACCACAGCAGAAACAGCCCACAAGACCCCCGCCTCCAAAGGTGCTCGGCTTTGATGATGACGACGATGATAACGTTGAGAGGGATATTTTGCGCCAAGCTTATAAGAAAAAGACCCACAAAGATGTTGAAGAGCAGCA...

LOC130993063
ATGTCAAAGTACGGGTTGCAGCTTAGAGTTAAACCACAGCAGAAACAGCCCACAAGACCCCCGCCTCCAAAGGTGCTCGGCTTTGATGATGACGACGATGATAACGTTGAGAGGGATATTTTGCGCCAAGCTTATAAGAAAAAGACCCACAAAGATGTTGAAGAGCAGCATAAAAAGGTTCTTGAAGAAGATCCTTTGGCATTTGACTATGATGGAGTATATGATCAAATGAAGGAGAAACAAGTTCGTCCTAAAGAGCA...

Protein

4 records

下载 Protein FASTA

XP_057773764.1
MDCLWTYSTNYVVMALRLGSLKSSLKLEQKMSKYGLQLRVKPQQKQPTRPPPPKVLGFDDDDDDNVERDILRQAYKKKTHKDVEEQHKKVLEEDPLAFDYDGVYDQMKEKQVRPKEQDRQDRKPRYIQGLIDKAKQREREHEIVYERKLAKERSQDEHLYADKDKFVTSAYKKKLAEQAKWVEEERLRELREQKDDVTTKADLSDFYFNLSKNVAFGSGDADKGKSAEVVALPPRQVSPTTTGTSSDLSRMAKRHQDEIS...

XP_057773765.1
MSKYGLQLRVKPQQKQPTRPPPPKVLGFDDDDDDNVERDILRQAYKKKTHKDVEEQHKKVLEEDPLAFDYDGVYDQMKEKQVRPKEQDRQDRKPRYIQGLIDKAKQREREHEIVYERKLAKERSQDEHLYADKDKFVTSAYKKKLAEQAKWVEEERLRELREQKDDVTTKADLSDFYFNLSKNVAFGSGDADKGKSAEVVALPPRQVSPTTTGTSSDLSRMAKRHQDEISENHSPKEKSGRPYREPSSDSSIKDQVAAEQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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