当前解析结果
SmilChr07G000608| 统一新 Gene ID | SmilChr07G000608 |
|---|---|
| 名称 | SmilChr07G000608 |
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4138005 - 4139363 / + |
| NCBI Gene ID | LOC130993081 |
|---|---|
| GeneID | 130993081 |
| locus_tag | - |
| NCBI Name | LOC130993081 |
| 原始查询 | LOC130993081 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 产物 | putative late blight resistance protein homolog R1A-3 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=28.1; qcov=1.05; evalue=8.74e-30; confidence=low |
| Rice | Os12g0500500- identity=35.6; qcov=0.491; evalue=4.98e-25; confidence=medium |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding) |
| KEGG | - |
| Pfam | PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993081 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773787.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057773787.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057773787.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773787.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773787.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4138039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,C3 |
Chr7:4138137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,C55,D6 |
Chr7:4138156 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C55,D6 |
Chr7:4138174 |
G |
A |
EMS_canonical_SNV | stop_gained | 28 | A10,A13,A18,A2,A24,A5,B106,B113,B126,B25,B35,B42,B43,B5,B51,B70,B81,B84,B9,C16,C20,C33,C58,C61,C62,C70,C82,C86 |
Chr7:4138231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,C47 |
Chr7:4138232 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr7:4138266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B44,C25,C3,C59,C83 |
Chr7:4138274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B44,C25,C3,C59,C83 |
Chr7:4138297 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B57,B91,C14 |
Chr7:4138313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,C80 |
Chr7:4138441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr7:4138472 |
A |
AAT |
2bp_insertion | frameshift_variant | 10 | A24,A7,B10,B106,B38,C45,C62,C73,C74,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773787.1PF23559
WHD_DRP 4-74 aa
PF23598
LRR_14 144-430 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773787.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 4 | 74 | 1.8e-21 | 76.6 | Disease resistance protein Winged helix domain |
XP_057773787.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 144 | 430 | 2.3e-16 | 60.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。