当前解析结果
SmilChr07G000612| 统一新 Gene ID | SmilChr07G000612 |
|---|---|
| 名称 | SmilChr07G000612 |
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4157654 - 4158034 / + |
| NCBI Gene ID | LOC130993082 |
|---|---|
| GeneID | 130993082 |
| locus_tag | - |
| NCBI Name | LOC130993082 |
| 原始查询 | LOC130993082 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-3 |
| 产物 | putative late blight resistance protein homolog R1A-3 |
| Arabidopsis | -- |
| Rice | -- |
| GO | GO:0006457 (protein folding); GO:0043014 (alpha-tubulin binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993082 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773788.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057773788.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057773788.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773788.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773788.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4157655 |
TGG |
T |
2bp_deletion | frameshift_variant | 4 | B123,B45,C49,C70 |
Chr7:4157655 |
TGG |
T |
2bp_deletion | CDS_variant | 4 | B123,B45,C49,C70 |
Chr7:4157740 |
G |
A |
EMS_canonical_SNV | stop_gained | 4 | B1,B12,B55,B93 |
Chr7:4157740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B12,B55,B93 |
Chr7:4157753 |
G |
GAC |
2bp_insertion | frameshift_variant | 2 | B34,C70 |
Chr7:4157753 |
G |
GAC |
2bp_insertion | CDS_variant | 2 | B34,C70 |
Chr7:4157788 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B55,B93 |
Chr7:4157798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B55,B93 |
Chr7:4157841 |
TC |
T |
1bp_deletion | frameshift_variant | 8 | B15,B44,B75,B8,C25,C47,C72,C79 |
Chr7:4157857 |
AC |
A |
1bp_deletion | frameshift_variant | 7 | A4,B123,B139,C10,C11,C40,C54 |
Chr7:4157860 |
A |
ATT |
2bp_insertion | frameshift_variant | 7 | A4,B123,B139,C10,C11,C40,C54 |
Chr7:4157878 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B30,B36,B62,C24,C84 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。