Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G004735`

染色体: Chr07 坐标: 60209536-60222815 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G004735`
名称	SmilChr07G004735
描述	ubiquitin-like domain-containing protein CIP73
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	60209536 - 60222815 / `-`

ID 对照

NCBI Gene ID	`LOC130993103`
GeneID	`130993103`
locus_tag	`-`
NCBI Name	`LOC130993103`
原始查询	`LOC130993103`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin-like domain-containing protein CIP73
产物	ubiquitin-like domain-containing protein CIP73
Arabidopsis	`AT5G25270` (AT5G25270) Ubiquitin-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832599] identity=43.7; qcov=0.991; evalue=3.41e-136; confidence=medium
Rice	`Os07g0498800` (CRTintP) - identity=36; qcov=0.75; evalue=5.75e-62; confidence=medium
GO	GO:0030433 (GO:0030433); GO:0031593 (polyubiquitin modification-dependent protein binding); GO:0051787 (misfolded protein binding); GO:0071818 (BAT3 complex)
KEGG	-
Pfam	PF00240 (ubiquitin); PF11976 (Rad60-SLD); PF14560 (Ubiquitin_2)
InterPro	-
eggNOG	-
NR	GeneID:130993103

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773816.1`
2	Cytoplasm	细胞质	1.00000	`XP_057773816.1`
3	Cytosol	细胞质基质	1.00000	`XP_057773816.1`
4	Nucleoplasm	核质	0.40000	`XP_057773816.1`
5	Nucleus membrane	核膜	0.20000	`XP_057773816.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:60210332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr7:60210529`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr7:60210635`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,C5
`Chr7:60211249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B49,B80,C41,C46
`Chr7:60211267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B53,C19,C22
`Chr7:60211469`	`G`	`GCA`	2bp_insertion	frameshift_variant	15	A7,B120,B19,B27,B31,B81,C1,C35,C36,C39,C8,C81,C9,D11,D3
`Chr7:60211474`	`G`	`GAT`	2bp_insertion	frameshift_variant	6	B120,B27,B31,C1,C9,D3
`Chr7:60211478`	`C`	`CAT`	2bp_insertion	frameshift_variant	3	B120,C1,C9
`Chr7:60211478`	`C`	`CAT`	2bp_insertion	CDS_variant	3	B120,C1,C9
`Chr7:60211480`	`C`	`CA`	1bp_insertion	frameshift_variant	3	B120,C1,C9
`Chr7:60211480`	`C`	`CA`	1bp_insertion	CDS_variant	3	B120,C1,C9
`Chr7:60211529`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773816.1

679 aa

340

679

Ubiquitin_2

Rad60-SLD

ubiquitin

PF14560 Ubiquitin_2 25-93 aa PF11976 Rad60-SLD 26-94 aa PF00240 ubiquitin 26-96 aa

XP_057773817.1

679 aa

340

679

Ubiquitin_2

Rad60-SLD

ubiquitin

PF14560 Ubiquitin_2 25-93 aa PF11976 Rad60-SLD 26-94 aa PF00240 ubiquitin 26-96 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773816.1`	Pfam	`PF14560`	Ubiquitin_2	Domain	25	93	4.5e-05	24.5	Ubiquitin-like domain
`XP_057773816.1`	Pfam	`PF11976`	Rad60-SLD	Family	26	94	1.4e-06	28.7	Ubiquitin-2 like Rad60 SUMO-like
`XP_057773816.1`	Pfam	`PF00240`	ubiquitin	Domain	26	96	2.4e-20	72.8	Ubiquitin family
`XP_057773817.1`	Pfam	`PF14560`	Ubiquitin_2	Domain	25	93	4.5e-05	24.5	Ubiquitin-like domain
`XP_057773817.1`	Pfam	`PF11976`	Rad60-SLD	Family	26	94	1.4e-06	28.7	Ubiquitin-2 like Rad60 SUMO-like
`XP_057773817.1`	Pfam	`PF00240`	ubiquitin	Domain	26	96	2.4e-20	72.8	Ubiquitin family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009091579.1
AAAATGAAAAGAGGCAGCGGATTCAAGAATAGTGAAGAATTCCAAATCCATTTCCCCATCATATATATCTCTACGTCGAAAGGCAACCACTAAAATTACACACACAATACTTATACGAAAAAAGGGAAAAGAATTTCAAGAAATTAGTGAAGAAACGCACACACATCAGCAATAGCGTAGCGCTGCCCCTTCTCTCTTTCAAGTTTCATATCTGCTGCTGACTACTCTCTCTCTCCCTCACTTGGGTTTTTATTTTCTCT...

XM_057917834.1
GGAAATTCGATGATTGTGCCGTATAACTTTGGATGAAAATGAAAAGAGGCAGCGGATTCAAGAATAGTGAAGAATTCCAAATCCATTTCCCCATCATATATATCTCTACGTCGAAAGGCAACCACTAAAATTACACACACAATACTTATACGAAAAAAGGGAAAAGAATTTCAAGAAATTAGTGAAGAAACGCACACACATCAGCAATAGCGTAGCGCTGCCCCTTCTCTCTTTCAAGTTTCATATCTGCTGCTGACTAC...

CDS

2 records

下载 CDS FASTA

LOC130993103
ATGGGAAGTAATGGTGGAGAGCACATAAAGATTTCTGGAAGGGATGCAGCTGAATGTTCTCAAACCACTGTTCTGATCAAGATCAAGACATTAGATTCTCAAACTTTCACTCTGCGAGTGGATAAATGCGTGCCTGTTCCAGAACTGAAGGAACAGATTGCTTCTGTAACTGGTGTCCTGTCGGAGCAACAACGCCTTATATGCCGTGGAAAAGTTTTGAAGGATGACCAGCTCCTCTCAGCTTATCATGTGGAAGATGG...

Protein

2 records

下载 Protein FASTA

XP_057773816.1
MGSNGGEHIKISGRDAAECSQTTVLIKIKTLDSQTFTLRVDKCVPVPELKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQPIATSAEQSDQQATDPTSSTGQNAGGRISPGMVVGTFNISEQGDGAFPDLNRIVSAVLNSFGVTRFGSGAEGIDLNQPPLERLSTASGLSGTRNSSRPQSDQAASVAIPVEPLQPPVIPDSLTTLLQYLSHLRQEFPAYGQSANAQSGRDGQDLESAVHSSETR...

XP_057773817.1
MGSNGGEHIKISGRDAAECSQTTVLIKIKTLDSQTFTLRVDKCVPVPELKEQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQPIATSAEQSDQQATDPTSSTGQNAGGRISPGMVVGTFNISEQGDGAFPDLNRIVSAVLNSFGVTRFGSGAEGIDLNQPPLERLSTASGLSGTRNSSRPQSDQAASVAIPVEPLQPPVIPDSLTTLLQYLSHLRQEFPAYGQSANAQSGRDGQDLESAVHSSETR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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