Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002042`

染色体: Chr07 坐标: 18520527-18524903 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002042`
名称	SmilChr07G002042
描述	aspartokinase 1, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	18520527 - 18524903 / `+`

ID 对照

NCBI Gene ID	`LOC130993121`
GeneID	`130993121`
locus_tag	`-`
NCBI Name	`LOC130993121`
原始查询	`LOC130993121`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	aspartokinase 1, chloroplastic
产物	aspartokinase 1%2C chloroplastic
Arabidopsis	`AT5G13280` (AK-LYS1) aspartate kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:831169] identity=70.5; qcov=0.952; evalue=0; confidence=high
Rice	`Os07g0300900` (B1114D08.10-1) - identity=73.8; qcov=0.882; evalue=0; confidence=high
GO	GO:0004072 (aspartate kinase activity); GO:0008652 (amino acid biosynthetic process); GO:0009570 (chloroplast stroma)
KEGG	smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00261 (Monobactam biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00300 (Lysine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00696 (AA_kinase); PF22468 (ACT_9)
InterPro	-
eggNOG	-
NR	GeneID:130993121

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057773857.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057773857.1`
3	Nucleus	细胞核	0.00000	`XP_057773857.1`
4	Chromosome	染色体	0.00000	`XP_057773857.1`
5	Centromere	着丝粒	0.00000	`XP_057773857.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:18520696`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,A7,C80
`Chr7:18520810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,B8,C58
`Chr7:18520879`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	C51
`Chr7:18520879`	`TGA`	`T`	2bp_deletion	CDS_variant	1	C51
`Chr7:18521120`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:18521986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A25,B66
`Chr7:18522023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr7:18522035`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:18522967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,B99
`Chr7:18523133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C82
`Chr7:18523134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A3,B80,C27
`Chr7:18523160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B140,B52,B98,C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773857.1

559 aa

280

559

AA_kinase

ACT_9

PF00696 AA_kinase 81-363 aa PF22468 ACT_9 476-535 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773857.1`	Pfam	`PF00696`	AA_kinase	Family	81	363	3.8e-47	161.7	Amino acid kinase family
`XP_057773857.1`	Pfam	`PF22468`	ACT_9	Domain	476	535	2.2e-22	79.3	ACT domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917874.1
GGGATTCAAGTTCAACAACATCACTACTGTAACCATTAGTTCTGGTGGAGAATTGCTCTAATAATGTCGATCTCACTCCACTCCTGCAATGCTAAGATTTTGCGCAACCATGAATTTCCCTCCCCGCACTCATTCCAACTCGCGAATCGCCACCAATTCGTCGATTTTCCTCCCAAATACAGATTATCTGCCCTCGTCGATCAAAAAAGGTCGCCATATTTCACGATTTACAGCAAGAAAGATGGGGACTCCGTAACCGA...

CDS

1 records

下载 CDS FASTA

LOC130993121
ATGTCGATCTCACTCCACTCCTGCAATGCTAAGATTTTGCGCAACCATGAATTTCCCTCCCCGCACTCATTCCAACTCGCGAATCGCCACCAATTCGTCGATTTTCCTCCCAAATACAGATTATCTGCCCTCGTCGATCAAAAAAGGTCGCCATATTTCACGATTTACAGCAAGAAAGATGGGGACTCCGTAACCGAAGCGGAAGCTTTTTCCGATTGGGGAAACACCGCCGAGGCTTTTACGTGCGTGATGAAGTTCGG...

Protein

1 records

下载 Protein FASTA

XP_057773857.1
MSISLHSCNAKILRNHEFPSPHSFQLANRHQFVDFPPKYRLSALVDQKRSPYFTIYSKKDGDSVTEAEAFSDWGNTAEAFTCVMKFGGSSVASAERMREVAYLIQCFPEEKPIVVLSAMGKTTNNLICAGEKAVSCGFTNVSEIEELSLIKQLHLRAVKELGIDASVISEQLEELELLLNGIARLKELTLRTRDKLVSFGECMSTRVFAAYLNSIDVKAQQYDAFDIGFVTTDDFTNAEILEATYPAVAAKLHGDWISNK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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