Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002045`

染色体: Chr07 坐标: 18545370-18554481 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002045`
名称	SmilChr07G002045
描述	ADP-ribosylation factor GTPase-activating protein AGD3
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	18545370 - 18554481 / `-`

ID 对照

NCBI Gene ID	`LOC130993126`
GeneID	`130993126`
locus_tag	`-`
NCBI Name	`LOC130993126`
原始查询	`LOC130993126`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor GTPase-activating protein AGD3
产物	ADP-ribosylation factor GTPase-activating protein AGD3
Arabidopsis	`AT5G13300` (SFC) ARF GTPase-activating protein [Source:NCBI gene (formerly Entrezgene);Acc:831171] identity=75.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os09g0510700` - identity=70.3; qcov=1.02; evalue=0; confidence=high
GO	GO:0005096 (GTPase activator activity); GO:0005515 (protein binding); GO:0005737 (cytoplasm)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00023 (Ank); PF00169 (PH); PF01412 (ArfGap); PF03114 (BAR); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF16746 (BAR_3)
InterPro	-
eggNOG	-
NR	GeneID:130993126

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057773872.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057773872.1`
3	Endocytic vesicle	Endocytic vesicle	0.60000	`XP_057773872.1`
4	Cytosol	细胞质基质	0.60000	`XP_057773872.1`
5	Trans-golgi network	Trans-golgi network	0.60000	`XP_057773872.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:18545809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A25,B66
`Chr7:18546215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr7:18546316`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B123,B52,B84,D3
`Chr7:18546376`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr7:18546409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,B75,C30,D9
`Chr7:18546973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B120,B121,B25,C50
`Chr7:18547339`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B103,B47,C87
`Chr7:18547447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C23,C86
`Chr7:18547953`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr7:18548489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,C83
`Chr7:18551093`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B133

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773872.1

829 aa

414

829

BAR_3

BAR

ArfGap

Ank_2

Ank_3

Ank

Ank_4

Ank_2

Ank_5

Ank

PF16746 BAR_3 6-235 aa PF03114 BAR 75-216 aa PF00169 PH 294-427 aa PF01412 ArfGap 502-637 aa PF12796 Ank_2 732-799 aa PF13606 Ank_3 736-765 aa PF00023 Ank 736-767 aa PF13637 Ank_4 741-790 aa PF12796 Ank_2 741-825 aa PF13857 Ank_5 762-810 aa PF00023 Ank 771-801 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773872.1`	Pfam	`PF16746`	BAR_3	Domain	6	235	3e-38	132.5	BAR domain of APPL family
`XP_057773872.1`	Pfam	`PF03114`	BAR	Domain	75	216	3.7e-12	47.1	BAR domain
`XP_057773872.1`	Pfam	`PF00169`	PH	Domain	294	427	4.6e-13	50.3	PH domain
`XP_057773872.1`	Pfam	`PF01412`	ArfGap	Domain	502	637	6.7e-32	110.7	Putative GTPase activating protein for Arf
`XP_057773872.1`	Pfam	`PF12796`	Ank_2	Repeat	732	799	4.9e-21	75.8	Ankyrin repeats (3 copies)
`XP_057773872.1`	Pfam	`PF13606`	Ank_3	Repeat	736	765	7e-10	38.9	Ankyrin repeat
`XP_057773872.1`	Pfam	`PF00023`	Ank	Repeat	736	767	6.9e-14	51.9	Ankyrin repeat
`XP_057773872.1`	Pfam	`PF13637`	Ank_4	Repeat	741	790	1.7e-09	38.4	Ankyrin repeats (many copies)
`XP_057773872.1`	Pfam	`PF12796`	Ank_2	Repeat	741	825	4.9e-21	75.8	Ankyrin repeats (3 copies)
`XP_057773872.1`	Pfam	`PF13857`	Ank_5	Repeat	762	810	2.2e-12	47.7	Ankyrin repeats (many copies)
`XP_057773872.1`	Pfam	`PF00023`	Ank	Repeat	771	801	6.9e-14	51.9	Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057917889.1
TTTCTTAAAACACACACTGTCTTTTTTATCTCAGAAAACAACAATTTTCAGCTCCCCACTTTCTAAACTTTACTCCTAATTTATAACCATACAAAAAATACTCCTATACTAAGAATACCATCCTCCAAAATCAAATACTACTGCAGGAAAATTGAAATTAACCCAACTAATTATTATACTTGAGAAAAAGGCCACCCCATAAAATTGACACCTTTTCTTGATTCTTCAACAAAACATTCATCAATTCCCAAGATTTCTCC...

CDS

1 records

下载 CDS FASTA

LOC130993126
ATGCATTTTGCTAAGCTTGATGACTCTCCTATGTTCCGTAAGCAGATACAGACCTTGGAGGAAAGTGCTGACTCCTTGGGGGAAAGATGTTTGAAGTTCTGCAAAGGATGTCGAAGATACACTGAAGGACTCGGTGAGGGATATGATGGAGACATAGCTTTTGCTAGTGCACTGGAAACTTTTGGTGGAGGCCATAATGACCCTATTAGTGTTGCCTTTGGAGGTCCTGTTATGACAAAATTCACTATTGCTTTGAGGGA...

Protein

1 records

下载 Protein FASTA

XP_057773872.1
MHFAKLDDSPMFRKQIQTLEESADSLGERCLKFCKGCRRYTEGLGEGYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHLLNDRLLQFVNLDLHDVKEARKRFDKASLLYDQAREKFLSLRKGTRSDVATVLEEELHHARSTFEQARFSLVTALSNVEAKKRFEFLEAVSETMASHLRYFKQGYELLHQMEPYINQVSTYAKQSKERSNYEQAALNERMQEYKRQIDRESRWSSNGSK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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