当前解析结果
SmilChr07G002073| 统一新 Gene ID | SmilChr07G002073 |
|---|---|
| 名称 | SmilChr07G002073 |
| 描述 | DEAD-box ATP-dependent RNA helicase 21-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 18860988 - 18863523 / - |
| NCBI Gene ID | LOC130993155 |
|---|---|
| GeneID | 130993155 |
| locus_tag | - |
| NCBI Name | LOC130993155 |
| 原始查询 | LOC130993155 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DEAD-box ATP-dependent RNA helicase 21-like |
| 产物 | DEAD-box ATP-dependent RNA helicase 21-like |
| Arabidopsis | AT2G33730 (AT2G33730)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817938] identity=85.3; qcov=0.833; evalue=0; confidence=high |
| Rice | Os03g0708600 (OsRH21)- identity=83.5; qcov=0.828; evalue=0; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0003723 (RNA binding); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0071013 (catalytic step 2 spliceosome) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF25430 (DDX23) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993155 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773916.1 |
| 2 | Nuclear speckle | 核斑点 | 0.40000 | XP_057773916.1 |
| 3 | Chromosome | 染色体 | 0.20000 | XP_057773916.1 |
| 4 | Chromatin | 染色质 | 0.20000 | XP_057773916.1 |
| 5 | Nucleoplasm | 核质 | 0.20000 | XP_057773916.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:18861448 |
GT |
G |
1bp_deletion | frameshift_variant | 4 | B57,B69,B7,C73 |
Chr7:18861448 |
GT |
G |
1bp_deletion | CDS_variant | 4 | B57,B69,B7,C73 |
Chr7:18861485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B34,B45 |
Chr7:18861541 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B92 |
Chr7:18861595 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C85 |
Chr7:18861598 |
A |
AT |
1bp_insertion | frameshift_variant | 7 | A16,A23,B128,B130,B15,B27,C84 |
Chr7:18861707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B131,C85 |
Chr7:18861774 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:18861818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr7:18861864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr7:18861909 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B77,C18,C63 |
Chr7:18861970 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B23,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773916.1PF25430
DDX23 164-247 aa
PF00270
DEAD 315-505 aa
PF00271
Helicase_C 540-649 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773916.1 |
Pfam | PF25430 |
DDX23 | Domain | 164 | 247 | 2.5e-22 | 80.3 | DDX23-like domain |
XP_057773916.1 |
Pfam | PF00270 |
DEAD | Domain | 315 | 505 | 3.8e-49 | 167.4 | DEAD/DEAH box helicase |
XP_057773916.1 |
Pfam | PF00271 |
Helicase_C | Domain | 540 | 649 | 2.5e-35 | 121.8 | Helicase conserved C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。