Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003354`

染色体: Chr01 坐标: 52291283-52294806 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003354`
名称	SmilChr01G003354
描述	ras-related protein RABC1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	52291283 - 52294806 / `-`

ID 对照

NCBI Gene ID	`LOC130993200`
GeneID	`130993200`
locus_tag	`-`
NCBI Name	`LOC130993200`
原始查询	`LOC130993200`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ras-related protein RABC1
产物	ras-related protein RABC1
Arabidopsis	`AT1G43890` (RAB18) RAB GTPASE HOMOLOG B18 [Source:NCBI gene (formerly Entrezgene);Acc:840987] identity=89.1; qcov=0.957; evalue=2.28e-131; confidence=high
Rice	`Os03g0146000` (OsRab18B2) - identity=64.6; qcov=0.995; evalue=2.59e-97; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding)
KEGG	-
Pfam	PF00025 (Arf); PF00071 (Ras); PF01926 (MMR_HSR1); PF04670 (Gtr1_RagA); PF08477 (Roc)
InterPro	-
eggNOG	-
NR	GeneID:130993200

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasmic vesicle	细胞质囊泡	1.00000	`XP_057773975.1`
2	Golgi apparatus	高尔基体	1.00000	`XP_057773975.1`
3	Trans-golgi network	Trans-golgi network	1.00000	`XP_057773975.1`
4	Endosome	内体	1.00000	`XP_057773975.1`
5	Endosome membrane	内体膜	0.80000	`XP_057773975.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:52291594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B89,D8
`Chr1:52291602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B17,B81,C56
`Chr1:52294237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,B111
`Chr1:52294347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B133

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773975.1

210 aa

105

210

Arf

Roc

Gtr1_RagA

Ras

MMR_HSR1

PF00025 Arf 15-173 aa PF08477 Roc 16-131 aa PF04670 Gtr1_RagA 16-136 aa PF00071 Ras 16-177 aa PF01926 MMR_HSR1 18-104 aa

XP_057773986.1

210 aa

105

210

Arf

Roc

Gtr1_RagA

Ras

MMR_HSR1

PF00025 Arf 15-173 aa PF08477 Roc 16-131 aa PF04670 Gtr1_RagA 16-136 aa PF00071 Ras 16-177 aa PF01926 MMR_HSR1 18-104 aa

XP_057773995.1

210 aa

105

210

Arf

Roc

Gtr1_RagA

Ras

MMR_HSR1

PF00025 Arf 15-173 aa PF08477 Roc 16-131 aa PF04670 Gtr1_RagA 16-136 aa PF00071 Ras 16-177 aa PF01926 MMR_HSR1 18-104 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773975.1`	Pfam	`PF00025`	Arf	Domain	15	173	2.4e-17	63.7	ADP-ribosylation factor family
`XP_057773975.1`	Pfam	`PF08477`	Roc	Domain	16	131	1.5e-31	109.8	Ras of Complex, Roc, domain of DAPkinase
`XP_057773975.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	16	136	5.3e-05	23.5	Gtr1/RagA G protein conserved region
`XP_057773975.1`	Pfam	`PF00071`	Ras	Domain	16	177	1.8e-58	197.4	Ras family
`XP_057773975.1`	Pfam	`PF01926`	MMR_HSR1	Family	18	104	6.4e-06	27.0	50S ribosome-binding GTPase
`XP_057773986.1`	Pfam	`PF00025`	Arf	Domain	15	173	2.4e-17	63.7	ADP-ribosylation factor family
`XP_057773986.1`	Pfam	`PF08477`	Roc	Domain	16	131	1.5e-31	109.8	Ras of Complex, Roc, domain of DAPkinase
`XP_057773986.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	16	136	5.3e-05	23.5	Gtr1/RagA G protein conserved region
`XP_057773986.1`	Pfam	`PF00071`	Ras	Domain	16	177	1.8e-58	197.4	Ras family
`XP_057773986.1`	Pfam	`PF01926`	MMR_HSR1	Family	18	104	6.4e-06	27.0	50S ribosome-binding GTPase
`XP_057773995.1`	Pfam	`PF00025`	Arf	Domain	15	173	2.4e-17	63.7	ADP-ribosylation factor family
`XP_057773995.1`	Pfam	`PF08477`	Roc	Domain	16	131	1.5e-31	109.8	Ras of Complex, Roc, domain of DAPkinase
`XP_057773995.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	16	136	5.3e-05	23.5	Gtr1/RagA G protein conserved region
`XP_057773995.1`	Pfam	`PF00071`	Ras	Domain	16	177	1.8e-58	197.4	Ras family
`XP_057773995.1`	Pfam	`PF01926`	MMR_HSR1	Family	18	104	6.4e-06	27.0	50S ribosome-binding GTPase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057918003.1
AAATATATTATGACACAAATAAATAAGCACAATGACTAGCAGAAAAAGTACAATCCTTTAGGCACCGCTTTTGCCGTTTCCCACCGTCACGAAGCAAAATCTTTTTCTCAAACGACCGCTTTAGCCCTTTTTCATCAGTTTGCTTTCTTCAGACTCAATCAGGAGTATTATTTTACAGTTGTTTACGTATTCAAGGCGTATAAATTTAAGGATAACTACACACACGAAATTAATTAATATTCATATTTGTAAGTGCATAA...

XM_057917992.1
GACTAGCAGAAAAAGTACAATCCTTTAGGCACCGCTTTTGCCGTTTCCCACCGTCACGAAGCAAAATCTTTTTCTCAAACGACCGCTTTAGCCCTTTTTCATCAGTTTGCTTTCTTCAGACTCAATCAGGAGTATTATTTTACAGTTGTTTACGTATTCAAGGCGTATAAATTTAAGGATAACTACACACACGAAATTAATTAATATTCATATTTGTCACAGTTTCCGAAGATTTTATTCTGTGGGCATCCGGTTTTATT...

CDS

3 records

下载 CDS FASTA

LOC130993200
ATGGAATCATCATCTGGGGCAGCGCCGGAATTCGATTATTTGTTCAAGTTGTTGATGATTGGAGATTCTGGGGTTGGGAAAAGTAGTCTTTTGCTGAGTTTCACATCTGATGCTTTCGAGGAGCTATCTCCCACAATTGGAGTGGATTTTAAGGTAAAACACGTAACACTTGGAGGAAAGAAACTGAAGCTTGCAATCTGGGACACAGCTGGACAGGAAAGATTTCGGACTTTGACTAGTTCCTACTATCGAGGGGCTCA...

Protein

3 records

下载 Protein FASTA

XP_057773975.1
MESSSGAAPEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEELSPTIGVDFKVKHVTLGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLFIECSAKTRVNVEQCFEELVLKILDTPSLLAEGSAGNKKNIFKQRPPESSDASSSCC

XP_057773986.1
MESSSGAAPEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEELSPTIGVDFKVKHVTLGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLFIECSAKTRVNVEQCFEELVLKILDTPSLLAEGSAGNKKNIFKQRPPESSDASSSCC

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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