当前解析结果
SmilChr07G002118| 统一新 Gene ID | SmilChr07G002118 |
|---|---|
| 名称 | SmilChr07G002118 |
| 描述 | uncharacterized SmilChr07G002118 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 19288000 - 19294826 / - |
| NCBI Gene ID | LOC130993201 |
|---|---|
| GeneID | 130993201 |
| locus_tag | - |
| NCBI Name | LOC130993201 |
| 原始查询 | LOC130993201 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os10g0485100; species=rice; confidence=medium |
| 产物 | hit=Os10g0485100; species=rice; confidence=medium |
| Arabidopsis | AT3G19780 (AT3G19780)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:821515] identity=40.8; qcov=0.52; evalue=4.73e-106; confidence=medium |
| Rice | Os10g0485100- identity=40.2; qcov=0.496; evalue=2.99e-111; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF02622 (DUF179); PF26959 (Thioredoxin-like_N); PF26981 (Thioredoxin-like_PDI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993201 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057773979.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057773970.1 |
| 3 | Endoplasmic reticulum lumen | 内质网腔 | 0.20000 | XP_057773979.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057773970.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057773970.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:19288217 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B101,C5,D11,D7 |
Chr7:19288306 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B106,C16 |
Chr7:19288326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C14,C73,D3 |
Chr7:19288340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A18,B108,B35,C52 |
Chr7:19288385 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:19289051 |
C |
CTA |
2bp_insertion | frameshift_variant | 3 | B20,B93,D5 |
Chr7:19289051 |
C |
CTA |
2bp_insertion | CDS_variant | 3 | B20,B93,D5 |
Chr7:19289392 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B26,B64,B72,C8 |
Chr7:19289411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B101,C5,D7 |
Chr7:19289884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C46,C83 |
Chr7:19289989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B44,C12,C6 |
Chr7:19290000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B44,B70,C40,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773970.1PF26959
Thioredoxin-like_N 35-153 aa
PF26981
Thioredoxin-like_PDI 816-973 aa
PF02622
DUF179 1030-1174 aa
XP_057773971.1PF26959
Thioredoxin-like_N 35-153 aa
PF26981
Thioredoxin-like_PDI 807-964 aa
PF02622
DUF179 1021-1165 aa
XP_057773972.1PF26959
Thioredoxin-like_N 35-153 aa
PF26981
Thioredoxin-like_PDI 799-956 aa
PF02622
DUF179 1013-1157 aa
XP_057773973.1PF26959
Thioredoxin-like_N 35-153 aa
PF26981
Thioredoxin-like_PDI 797-954 aa
PF02622
DUF179 1011-1155 aa
XP_057773974.1PF26959
Thioredoxin-like_N 35-153 aa
PF26981
Thioredoxin-like_PDI 792-949 aa
PF02622
DUF179 1006-1150 aa
XP_057773976.1PF26959
Thioredoxin-like_N 13-102 aa
PF26981
Thioredoxin-like_PDI 765-922 aa
PF02622
DUF179 979-1123 aa
XP_057773977.1PF26959
Thioredoxin-like_N 13-102 aa
PF26981
Thioredoxin-like_PDI 748-905 aa
PF02622
DUF179 962-1106 aa
XP_057773978.1PF26959
Thioredoxin-like_N 13-102 aa
PF26981
Thioredoxin-like_PDI 746-903 aa
PF02622
DUF179 960-1104 aa
XP_057773979.1PF26981
Thioredoxin-like_PDI 591-748 aa
PF02622
DUF179 805-949 aa
XP_057773980.1PF26981
Thioredoxin-like_PDI 591-748 aa
PF02622
DUF179 805-949 aa
XP_057773981.1PF26981
Thioredoxin-like_PDI 591-748 aa
PF02622
DUF179 805-949 aa
XP_057773982.1PF26981
Thioredoxin-like_PDI 591-748 aa
PF02622
DUF179 805-949 aa
XP_057773983.1PF26981
Thioredoxin-like_PDI 591-748 aa
PF02622
DUF179 805-949 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773970.1 |
Pfam | PF26959 |
Thioredoxin-like_N | Domain | 35 | 153 | 3.2e-55 | 186.1 | Thioredoxin-like N-terminal domain |
XP_057773970.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 816 | 973 | 2.6e-51 | 174.4 | PDI-like, Thioredoxin-like domain |
XP_057773970.1 |
Pfam | PF02622 |
DUF179 | Domain | 1030 | 1174 | 6.7e-16 | 59.2 | AlgH-like |
XP_057773971.1 |
Pfam | PF26959 |
Thioredoxin-like_N | Domain | 35 | 153 | 3.2e-55 | 186.1 | Thioredoxin-like N-terminal domain |
XP_057773971.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 807 | 964 | 2.6e-51 | 174.4 | PDI-like, Thioredoxin-like domain |
XP_057773971.1 |
Pfam | PF02622 |
DUF179 | Domain | 1021 | 1165 | 6.6e-16 | 59.2 | AlgH-like |
XP_057773972.1 |
Pfam | PF26959 |
Thioredoxin-like_N | Domain | 35 | 153 | 3.1e-55 | 186.2 | Thioredoxin-like N-terminal domain |
XP_057773972.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 799 | 956 | 2.6e-51 | 174.4 | PDI-like, Thioredoxin-like domain |
XP_057773972.1 |
Pfam | PF02622 |
DUF179 | Domain | 1013 | 1157 | 6.6e-16 | 59.2 | AlgH-like |
XP_057773973.1 |
Pfam | PF26959 |
Thioredoxin-like_N | Domain | 35 | 153 | 3.1e-55 | 186.2 | Thioredoxin-like N-terminal domain |
XP_057773973.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 797 | 954 | 2.6e-51 | 174.4 | PDI-like, Thioredoxin-like domain |
XP_057773973.1 |
Pfam | PF02622 |
DUF179 | Domain | 1011 | 1155 | 6.5e-16 | 59.2 | AlgH-like |
XP_057773974.1 |
Pfam | PF26959 |
Thioredoxin-like_N | Domain | 35 | 153 | 3.1e-55 | 186.2 | Thioredoxin-like N-terminal domain |
XP_057773974.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 792 | 949 | 2.6e-51 | 174.4 | PDI-like, Thioredoxin-like domain |
XP_057773974.1 |
Pfam | PF02622 |
DUF179 | Domain | 1006 | 1150 | 6.4e-16 | 59.2 | AlgH-like |
XP_057773976.1 |
Pfam | PF26959 |
Thioredoxin-like_N | Domain | 13 | 102 | 1.2e-36 | 126.1 | Thioredoxin-like N-terminal domain |
XP_057773976.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 765 | 922 | 2.5e-51 | 174.5 | PDI-like, Thioredoxin-like domain |
XP_057773976.1 |
Pfam | PF02622 |
DUF179 | Domain | 979 | 1123 | 6.2e-16 | 59.3 | AlgH-like |
XP_057773977.1 |
Pfam | PF26959 |
Thioredoxin-like_N | Domain | 13 | 102 | 1.1e-36 | 126.2 | Thioredoxin-like N-terminal domain |
XP_057773977.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 748 | 905 | 2.4e-51 | 174.5 | PDI-like, Thioredoxin-like domain |
XP_057773977.1 |
Pfam | PF02622 |
DUF179 | Domain | 962 | 1106 | 6.1e-16 | 59.3 | AlgH-like |
XP_057773978.1 |
Pfam | PF26959 |
Thioredoxin-like_N | Domain | 13 | 102 | 1.1e-36 | 126.2 | Thioredoxin-like N-terminal domain |
XP_057773978.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 746 | 903 | 2.4e-51 | 174.5 | PDI-like, Thioredoxin-like domain |
XP_057773978.1 |
Pfam | PF02622 |
DUF179 | Domain | 960 | 1104 | 6.1e-16 | 59.3 | AlgH-like |
XP_057773979.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 591 | 748 | 1.9e-51 | 174.8 | PDI-like, Thioredoxin-like domain |
XP_057773979.1 |
Pfam | PF02622 |
DUF179 | Domain | 805 | 949 | 6.5e-16 | 59.2 | AlgH-like |
XP_057773980.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 591 | 748 | 1.9e-51 | 174.8 | PDI-like, Thioredoxin-like domain |
XP_057773980.1 |
Pfam | PF02622 |
DUF179 | Domain | 805 | 949 | 6.5e-16 | 59.2 | AlgH-like |
XP_057773981.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 591 | 748 | 1.9e-51 | 174.8 | PDI-like, Thioredoxin-like domain |
XP_057773981.1 |
Pfam | PF02622 |
DUF179 | Domain | 805 | 949 | 6.5e-16 | 59.2 | AlgH-like |
XP_057773982.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 591 | 748 | 1.9e-51 | 174.8 | PDI-like, Thioredoxin-like domain |
XP_057773982.1 |
Pfam | PF02622 |
DUF179 | Domain | 805 | 949 | 6.5e-16 | 59.2 | AlgH-like |
XP_057773983.1 |
Pfam | PF26981 |
Thioredoxin-like_PDI | Domain | 591 | 748 | 1.9e-51 | 174.8 | PDI-like, Thioredoxin-like domain |
XP_057773983.1 |
Pfam | PF02622 |
DUF179 | Domain | 805 | 949 | 6.5e-16 | 59.2 | AlgH-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
13 records
下载 cDNA FASTA13 records
下载 CDS FASTA13 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。