当前解析结果
SmilChr07G002152| 统一新 Gene ID | SmilChr07G002152 |
|---|---|
| 名称 | SmilChr07G002152 |
| 描述 | myosin-1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 19680598 - 19690833 / - |
| NCBI Gene ID | LOC130993223 |
|---|---|
| GeneID | 130993223 |
| locus_tag | - |
| NCBI Name | LOC130993223 |
| 原始查询 | LOC130993223 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | myosin-1 |
| 产物 | myosin-1 |
| Arabidopsis | AT3G19960 (ATM1)myosin 1 [Source:NCBI gene (formerly Entrezgene);Acc:821534] identity=76.6; qcov=1; evalue=0; confidence=high |
| Rice | Os10g0488800 (OSMYOVIIIB)- identity=73.5; qcov=0.817; evalue=0; confidence=high |
| GO | GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding) |
| KEGG | - |
| Pfam | PF00063 (Myosin_head); PF00612 (IQ); PF25369 (SH3_VIII-1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993223 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057774016.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057774016.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774016.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774016.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774016.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:19680969 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B75,C27,C83 |
Chr7:19681044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A19,B28,B70,C34,C56 |
Chr7:19681057 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A24,A7,B12,B94,C80 |
Chr7:19681085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B85 |
Chr7:19681106 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr7:19681185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:19681278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B102,C23 |
Chr7:19682209 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr7:19682411 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:19682619 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B138,B31,C72,C86 |
Chr7:19682829 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr7:19683280 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,B123,C7,C76 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774016.1PF25369
SH3_VIII-1_N 118-162 aa
PF00063
Myosin_head 170-830 aa
PF00612
IQ 848-865 aa
PF00612
IQ 869-887 aa
PF00612
IQ 894-913 aa
PF00612
IQ 917-934 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774016.1 |
Pfam | PF25369 |
SH3_VIII-1_N | Domain | 118 | 162 | 1.4e-22 | 79.5 | Myosin-1-like, N-terminal SH3 domain |
XP_057774016.1 |
Pfam | PF00063 |
Myosin_head | Domain | 170 | 830 | 6.5e-243 | 808.6 | Myosin head (motor domain) |
XP_057774016.1 |
Pfam | PF00612 |
IQ | Motif | 848 | 865 | 9.7e-11 | 41.2 | IQ calmodulin-binding motif |
XP_057774016.1 |
Pfam | PF00612 |
IQ | Motif | 869 | 887 | 9.7e-11 | 41.2 | IQ calmodulin-binding motif |
XP_057774016.1 |
Pfam | PF00612 |
IQ | Motif | 894 | 913 | 9.7e-11 | 41.2 | IQ calmodulin-binding motif |
XP_057774016.1 |
Pfam | PF00612 |
IQ | Motif | 917 | 934 | 9.7e-11 | 41.2 | IQ calmodulin-binding motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。