Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002161`

染色体: Chr07 坐标: 19764494-19770523 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002161`
名称	SmilChr07G002161
描述	plant UBX domain-containing protein 7
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	19764494 - 19770523 / `-`

ID 对照

NCBI Gene ID	`LOC130993231`
GeneID	`130993231`
locus_tag	`-`
NCBI Name	`LOC130993231`
原始查询	`LOC130993231`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plant UBX domain-containing protein 7
产物	plant UBX domain-containing protein 7
Arabidopsis	`AT1G14570` (AT1G14570) UBX domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838019] identity=56.1; qcov=1.05; evalue=6.86e-177; confidence=high
Rice	`Os04g0670800` - identity=47.8; qcov=1.07; evalue=1.68e-146; confidence=high
GO	GO:0005634 (nucleus); GO:0043130 (ubiquitin binding); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	-
Pfam	PF00789 (UBX); PF13098 (Thioredoxin_2); PF13899 (Thioredoxin_7); PF14555 (UBA_4)
InterPro	-
eggNOG	-
NR	GeneID:130993231

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774029.1`
2	Cytoplasm	细胞质	1.00000	`XP_057774029.1`
3	Cytosol	细胞质基质	1.00000	`XP_057774032.1`
4	Nucleoplasm	核质	0.80000	`XP_057774032.1`
5	Chromosome	染色体	0.00000	`XP_057774029.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:19765726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr7:19766920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr7:19766983`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr7:19767292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr7:19767879`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B106,C46
`Chr7:19768011`	`C`	`T`	EMS_canonical_SNV	stop_gained	156	A1,A11,A14,A15,A18,A2,A21,A23,A24,A25,A5,A7,A8,A9,B1,B101,B103,B104,B105,B107,B108,B11,B113,B115,B118,B12,B120,B125,B127,B128,B129,B13,B132,B133,B135,B136,B137,B138,B139,B140,B17,B18,B19,B2,B20,B24,B25,B27,B28,B29,B3,B30,B31,B35,B37,B38,B40,B41,B43,B45,B46,B49,B52,B55,B56,B57,B58,B59,B6,B61,B62,B63,B64,B66,B68,B69,B7,B70,B71,B72,B76,B78,B8,B80,B81,B83,B84,B86,B87,B88,B89,B9,B91,B94,B96,B97,C1,C11,C13,C16,C17,C18,C19,C20,C22,C24,C25,C27,C28,C30,C31,C32,C33,C34,C37,C39,C4,C40,C43,C45,C47,C48,C50,C51,C53,C54,C55,C56,C57,C59,C60,C61,C62,C63,C64,C66,C68,C69,C70,C71,C72,C74,C77,C79,C8,C80,C81,C83,C85,C87,C9,D10,D11,D5,D6,D9
`Chr7:19768698`	`G`	`GAA`	2bp_insertion	frameshift_variant	1	C85
`Chr7:19768698`	`G`	`GAA`	2bp_insertion	CDS_variant	1	C85
`Chr7:19770229`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B36,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774029.1

451 aa

226

451

UBA_4

Thioredoxin_7

Thioredoxin_2

UBX

PF14555 UBA_4 12-50 aa PF13899 Thioredoxin_7 175-254 aa PF13098 Thioredoxin_2 176-274 aa PF00789 UBX 374-444 aa

XP_057774031.1

450 aa

225

450

UBA_4

Thioredoxin_7

Thioredoxin_2

UBX

PF14555 UBA_4 12-50 aa PF13899 Thioredoxin_7 174-253 aa PF13098 Thioredoxin_2 175-273 aa PF00789 UBX 373-443 aa

XP_057774032.1

449 aa

224

449

UBA_4

Thioredoxin_7

Thioredoxin_2

UBX

PF14555 UBA_4 12-50 aa PF13899 Thioredoxin_7 175-254 aa PF13098 Thioredoxin_2 176-274 aa PF00789 UBX 372-442 aa

XP_057774033.1

448 aa

224

448

UBA_4

Thioredoxin_7

Thioredoxin_2

UBX

PF14555 UBA_4 12-50 aa PF13899 Thioredoxin_7 174-253 aa PF13098 Thioredoxin_2 175-273 aa PF00789 UBX 371-441 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774029.1`	Pfam	`PF14555`	UBA_4	Domain	12	50	1.3e-11	44.8	UBA-like domain
`XP_057774029.1`	Pfam	`PF13899`	Thioredoxin_7	Domain	175	254	7.4e-14	52.4	Thioredoxin-like
`XP_057774029.1`	Pfam	`PF13098`	Thioredoxin_2	Domain	176	274	1.2e-06	29.6	Thioredoxin-like domain
`XP_057774029.1`	Pfam	`PF00789`	UBX	Domain	374	444	1.1e-07	32.6	UBX domain
`XP_057774031.1`	Pfam	`PF14555`	UBA_4	Domain	12	50	1.3e-11	44.8	UBA-like domain
`XP_057774031.1`	Pfam	`PF13899`	Thioredoxin_7	Domain	174	253	7.4e-14	52.4	Thioredoxin-like
`XP_057774031.1`	Pfam	`PF13098`	Thioredoxin_2	Domain	175	273	1.2e-06	29.6	Thioredoxin-like domain
`XP_057774031.1`	Pfam	`PF00789`	UBX	Domain	373	443	1.1e-07	32.6	UBX domain
`XP_057774032.1`	Pfam	`PF14555`	UBA_4	Domain	12	50	1.3e-11	44.7	UBA-like domain
`XP_057774032.1`	Pfam	`PF13899`	Thioredoxin_7	Domain	175	254	7.3e-14	52.4	Thioredoxin-like
`XP_057774032.1`	Pfam	`PF13098`	Thioredoxin_2	Domain	176	274	1.2e-06	29.6	Thioredoxin-like domain
`XP_057774032.1`	Pfam	`PF00789`	UBX	Domain	372	442	1.1e-07	32.6	UBX domain
`XP_057774033.1`	Pfam	`PF14555`	UBA_4	Domain	12	50	1.3e-11	44.8	UBA-like domain
`XP_057774033.1`	Pfam	`PF13899`	Thioredoxin_7	Domain	174	253	7.3e-14	52.4	Thioredoxin-like
`XP_057774033.1`	Pfam	`PF13098`	Thioredoxin_2	Domain	175	273	1.1e-06	29.6	Thioredoxin-like domain
`XP_057774033.1`	Pfam	`PF00789`	UBX	Domain	371	441	1.1e-07	32.6	UBX domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057918048.1
CCATATACGTATACGAATAGAAATAGAAATATGATGGTAAGTAAATAAGCAAATCTTTATCGAAAAGGAGAGCGAAAAATACGGATAAAAGTTATTTCATAGTATACGGATACGGATGTTTAAAGAGTTATCTCTCTCAAAACTCTTAATATTCCACTCTCCAAAAACCTAATTTGCAAAATCAGTAGCAGCGTCAATGGAGAGCGTCGTATCTGCTGTGGATCAGCAGAGCTTGGTTTCCTCCTTTTTGGAGATCGCCG...

XM_057918046.1
CGTATACGAATAGAAATAGAAATATGATGGTAAGTAAATAAGCAAATCTTTATCGAAAAGGAGAGCGAAAAATACGGATAAAAGTTATTTCATAGTATACGGATACGGATGTTTAAAGAGTTATCTCTCTCAAAACTCTTAATATTCCACTCTCCAAAAACCTAATTTGCAAAATCAGTAGCAGCGTCAATGGAGAGCGTCGTATCTGCTGTGGATCAGCAGAGCTTGGTTTCCTCCTTTTTGGAGATCGCCGTCGGCCA...

CDS

4 records

下载 CDS FASTA

LOC130993231
ATGGAGAGCGTCGTATCTGCTGTGGATCAGCAGAGCTTGGTTTCCTCCTTTTTGGAGATCGCCGTCGGCCAAACCGCTGACACTGCCCGCCAGTTCCTCCAGGCTACTAGCTGGAAGCTTGAGGAAGCTATTCAACTTTATTTCATTGGCAATGAAGGCAGGGCAGGCCAACCTCCTCAGTATTTTCCACCACTGGGAAATGATTTGCCCCTACATGATTTAGAAAAGGATTTGGGTGGTCCAGATGATAGACAAGATGA...

Protein

4 records

下载 Protein FASTA

XP_057774029.1
MESVVSAVDQQSLVSSFLEIAVGQTADTARQFLQATSWKLEEAIQLYFIGNEGRAGQPPQYFPPLGNDLPLHDLEKDLGGPDDRQDDTDGVRAPLPVKRDVLYDSPMLYGRTLRTGGSSQGTHSVVPFRNFQEEMKRPGVWEAEQGSSSSVPDKIQDNLASLYRPPFAIMYHGPFEKAKDNARVQNKWLLINMQSTKEFSSHMLNRDTWANEAVAQTIKTNFVFWQVYDDTEEGSKVCTYYKLDSIPVIMVIDPITGQKM...

XP_057774031.1
MESVVSAVDQQSLVSSFLEIAVGQTADTARQFLQATSWKLEEAIQLYFIGNEGRAGQPPQYFPPLGNDLPLHDLEKDLGGPDDRQDDTDGVRAPLPVKRDVLYDSPMLYGTLRTGGSSQGTHSVVPFRNFQEEMKRPGVWEAEQGSSSSVPDKIQDNLASLYRPPFAIMYHGPFEKAKDNARVQNKWLLINMQSTKEFSSHMLNRDTWANEAVAQTIKTNFVFWQVYDDTEEGSKVCTYYKLDSIPVIMVIDPITGQKMR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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