Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002148`

染色体: Chr07 坐标: 19662611-19664060 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002148`
名称	SmilChr07G002148
描述	putative GEM-like protein 8
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	19662611 - 19664060 / `+`

ID 对照

NCBI Gene ID	`LOC130993242`
GeneID	`130993242`
locus_tag	`-`
NCBI Name	`LOC130993242`
原始查询	`LOC130993242`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative GEM-like protein 8
产物	putative GEM-like protein 8
Arabidopsis	`AT5G23370` (AT5G23370) GRAM domain-containing protein / ABA-responsive protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:832401] identity=52.7; qcov=0.842; evalue=2.87e-73; confidence=high
Rice	`Os02g0636700` - identity=53.4; qcov=0.979; evalue=6.31e-79; confidence=high
GO	-
KEGG	-
Pfam	PF02893 (GRAM)
InterPro	-
eggNOG	-
NR	GeneID:130993242

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057774047.1`
2	Cytosol	细胞质基质	0.40000	`XP_057774046.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057774046.1`
4	Nucleus	细胞核	0.00000	`XP_057774046.1`
5	Chromosome	染色体	0.00000	`XP_057774046.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:19662899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B92,D10
`Chr7:19662922`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,B56,B96
`Chr7:19662994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B102,B107,B132,C71
`Chr7:19663162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B103,B126
`Chr7:19663194`	`G`	`GAA`	2bp_insertion	frameshift_variant	11	B119,B12,B30,B38,B4,B42,B72,B81,C36,C53,C62
`Chr7:19663202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B12,B4,B42,B81
`Chr7:19663370`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A19,B20,B47,B89
`Chr7:19663441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr7:19663442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:19663497`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B111,C52,C66
`Chr7:19663558`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,D10
`Chr7:19663628`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774046.1

269 aa

134

269

GRAM

PF02893 GRAM 121-268 aa

XP_057774047.1

241 aa

120

241

GRAM

PF02893 GRAM 121-240 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774046.1`	Pfam	`PF02893`	GRAM	Domain	121	268	1.5e-12	48.0	GRAM domain
`XP_057774047.1`	Pfam	`PF02893`	GRAM	Domain	121	240	5.8e-14	52.6	GRAM domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918063.1
ATCTAATCACTTAAAAGAAGCAAAGAAAGCAAGCTGAGAAACCAACTTTATCAGAAAAATGAAAAGAAAAGAAAAGGGTGATATCTTCCCACCTTTAGCATTTGATGATACAAAGCTGACTCATGCTGCTAAAAAGTAGAGATTAAACAACTGCTCTTGATCTGTTATATATTGTGGCAAAGACATGCTCGTACCAGAACAAGCTTCAGGCAAGGGACAAGTTTTCAGAGACGAACATTCTAAAGCATTTGGTTGGTTTG...

XM_057918064.1
ATCTAATCACTTAAAAGAAGCAAAGAAAGCAAGCTGAGAAACCAACTTTATCAGAAAAATGAAAAGAAAAGAAAAGGGTGATATCTTCCCACCTTTAGCATTTGATGATACAAAGCTGACTCATGCTGCTAAAAAGTAGAGATTAAACAACTGCTCTTGATCTGTTATATATTGTGGCAAAGACATGCTCGTACCAGAACAAGCTTCAGGCAAGGGACAAGTTTTCAGAGACGAACATTCTAAAGCATTTGGTTGGTTTG...

CDS

2 records

下载 CDS FASTA

LOC130993242
ATGGAAGTGAAGCATATGAGAACGAGATATGGGAAGACGAGTATGCTTAAGGAACATGCTATTGGGGCTCCGATCAGCTCAGCAAAGTACGCATTCGTGTATAAGAACAGTTTGAAGGAACTTTTACCTGATCCTGCTGCACAGTACCAACTGCTGCCTTCTCCAGCCAATCATTATTCCAAGATAAGAACTGATAGAGGAAATTCAGTGATTGCCAAGATGATCAAACTTGGCAAAGCCATGGATGTCATTGCTCAGGG...

Protein

2 records

下载 Protein FASTA

XP_057774046.1
MEVKHMRTRYGKTSMLKEHAIGAPISSAKYAFVYKNSLKELLPDPAAQYQLLPSPANHYSKIRTDRGNSVIAKMIKLGKAMDVIAQGIREHVRLGPKLSETVKGKLSLGARILQVGGVEKVFKQKFNVTDDEKLLKASQCYLSTTAGPIAGLLFVSTERVAFCSERSIRISSPNGKLLKAHYKVRSSLLYFQLNTFTFQPKNMVQIKLYVQVMIPLRKLKRAHESENAKKPAEKYVHLVTGDNFDFWFMGFLNHQRTLKY...

XP_057774047.1
MEVKHMRTRYGKTSMLKEHAIGAPISSAKYAFVYKNSLKELLPDPAAQYQLLPSPANHYSKIRTDRGNSVIAKMIKLGKAMDVIAQGIREHVRLGPKLSETVKGKLSLGARILQVGGVEKVFKQKFNVTDDEKLLKASQCYLSTTAGPIAGLLFVSTERVAFCSERSIRISSPNGKLLKAHYKVMIPLRKLKRAHESENAKKPAEKYVHLVTGDNFDFWFMGFLNHQRTLKYLQQVIHQAR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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