当前解析结果
SmilChr07G002199| 统一新 Gene ID | SmilChr07G002199 |
|---|---|
| 名称 | SmilChr07G002199 |
| 描述 | uncharacterized SmilChr07G002199 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 20231026 - 20235360 / + |
| NCBI Gene ID | LOC130993279 |
|---|---|
| GeneID | 130993279 |
| locus_tag | - |
| NCBI Name | LOC130993279 |
| 原始查询 | LOC130993279 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831556]; symbol=AT5G16930; hit=AT5G16930; species=arabidopsis; confidence=high |
| 产物 | AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831556]; symbol=AT5G16930; hit=AT5G16930; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G16930 (AT5G16930)AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:831556] identity=74.3; qcov=1.02; evalue=0; confidence=high |
| Rice | Os02g0697600- identity=67.9; qcov=0.997; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005739 (mitochondrion); GO:0007005 (mitochondrion organization); GO:0008270 (zinc ion binding); GO:0016887 (ATP hydrolysis activity) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF12037 (ATAD3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993279 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057774092.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057774092.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.80000 | XP_057774092.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057774092.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774092.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:20231178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B30,B37,B59,B84 |
Chr7:20231308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C14 |
Chr7:20231405 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B14,C2,C77 |
Chr7:20232764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:20232863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:20232907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B2,B53 |
Chr7:20234034 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:20234064 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
Chr7:20234067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,C61 |
Chr7:20234107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,B61 |
Chr7:20234137 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | A15 |
Chr7:20234137 |
TG |
T |
1bp_deletion | CDS_variant | 1 | A15 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774092.1PF12037
ATAD3_N 50-316 aa
PF00004
AAA 385-512 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774092.1 |
Pfam | PF12037 |
ATAD3_N | Domain | 50 | 316 | 3e-106 | 355.3 | ATPase family AAA domain-containing protein 3, N-terminal |
XP_057774092.1 |
Pfam | PF00004 |
AAA | Domain | 385 | 512 | 5.5e-26 | 92.3 | ATPase family associated with various cellular activities (AAA) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。