Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002202`

染色体: Chr07 坐标: 20263208-20278573 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002202`
名称	SmilChr07G002202
描述	protein EXPORTIN 1A-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	20263208 - 20278573 / `+`

ID 对照

NCBI Gene ID	`LOC130993282`
GeneID	`130993282`
locus_tag	`-`
NCBI Name	`LOC130993282`
原始查询	`LOC130993282`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein EXPORTIN 1A-like
产物	protein EXPORTIN 1A-like
Arabidopsis	`AT5G17020` (XPO1A) exportin 1A [Source:NCBI gene (formerly Entrezgene);Acc:831565] identity=85; qcov=1; evalue=0; confidence=high
Rice	`Os03g0858100` - identity=83.6; qcov=0.998; evalue=0; confidence=high
GO	GO:0000055 (ribosomal large subunit export from nucleus); GO:0000056 (ribosomal small subunit export from nucleus); GO:0005049 (nuclear export signal receptor activity); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006611 (protein export from nucleus); GO:0031267 (small GTPase binding)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)); smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage)); smil03250 (Viral life cycle - HIV-1 - Salvia miltiorrhiza (redroot sage))
Pfam	PF03810 (IBN_N); PF08389 (Xpo1); PF08767 (CRM1_C); PF18777 (CRM1_repeat); PF18784 (CRM1_repeat_2); PF18787 (CRM1_repeat_3)
InterPro	-
eggNOG	-
NR	GeneID:130993282

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774096.1`
2	Cytoplasm	细胞质	1.00000	`XP_057774096.1`
3	Nucleoplasm	核质	0.80000	`XP_057774096.1`
4	Cytosol	细胞质基质	0.80000	`XP_057774096.1`
5	Nucleus membrane	核膜	0.40000	`XP_057774096.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:20265927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,C35,C40,C81
`Chr7:20266434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,A21,B101,B75,D11
`Chr7:20267056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr7:20268581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,B61
`Chr7:20268795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B26,B73,C12,C14
`Chr7:20269374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:20274021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B49,C18,C24
`Chr7:20275445`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr7:20275617`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B102,B104,B15,C23,C51
`Chr7:20275713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B89,C63,C79
`Chr7:20276396`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,C8
`Chr7:20276697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A16,A21,B101,B75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774096.1

1083 aa

542

1083

IBN_N

Xpo1

CRM1_repeat

CRM1_repeat_2

CRM1_repeat_3

CRM1_C

PF03810 IBN_N 38-102 aa PF08389 Xpo1 115-258 aa PF18777 CRM1_repeat 337-372 aa PF18784 CRM1_repeat_2 409-476 aa PF18787 CRM1_repeat_3 489-539 aa PF08767 CRM1_C 713-1041 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774096.1`	Pfam	`PF03810`	IBN_N	Repeat	38	102	1.9e-16	60.5	Importin-beta N-terminal domain
`XP_057774096.1`	Pfam	`PF08389`	Xpo1	Repeat	115	258	2.8e-44	151.5	Exportin 1-like protein
`XP_057774096.1`	Pfam	`PF18777`	CRM1_repeat	Repeat	337	372	2.7e-18	66.0	Chromosome region maintenance or exportin repeat
`XP_057774096.1`	Pfam	`PF18784`	CRM1_repeat_2	Repeat	409	476	1.8e-31	108.3	CRM1 / Exportin repeat 2
`XP_057774096.1`	Pfam	`PF18787`	CRM1_repeat_3	Repeat	489	539	7.1e-27	93.9	CRM1 / Exportin repeat 3
`XP_057774096.1`	Pfam	`PF08767`	CRM1_C	Repeat	713	1041	3.1e-130	434.8	CRM1 C terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057918113.1
AAACAAGAGAGAAGGGGCTAAACCCCAATTTAAAAGTCTCTCTCTAAAATCCCTCTGCTTCAATTTGAAGCTGTCTTTTTTATTTCCAATTCAGCCCTCATCCCCCATCTCTCCCTCCTTTTTCCTTATCACAAGTTTTTGTAAATATAGACTTGGTTTAGTCGCGCTAGTGCTCTAGGGTTTTACCACTACTGAGTTCCTTTGCCTAGGGTTTAAATTTGAGTGACTGGTGATCTCATCCATGGCGGCCGAAAAGCTTC...

CDS

1 records

下载 CDS FASTA

LOC130993282
ATGGCGGCCGAAAAGCTTCGGGATTTGAGTCAGCCGTTGGATGTTTCCCTGCTCGACGCCACCGTCGCCGCTTTCTATGGGACCGGATCTAAAGAGGAGAGGACCGCTGCAGACCATATCTTGCGAGATTTACAAAATAACCCAGATATGTGGCTTCAAGTGGTCCACATTTTATCTAGTGCTCAGAATTTGAACACAAAGTTTTTTGCTTTACAGGTTCTGGAAGGTGTTATTAAGTACAGATGGAATGCTTTACCTCT...

Protein

1 records

下载 Protein FASTA

XP_057774096.1
MAAEKLRDLSQPLDVSLLDATVAAFYGTGSKEERTAADHILRDLQNNPDMWLQVVHILSSAQNLNTKFFALQVLEGVIKYRWNALPLEQRDGMKNYISDVIVKLSSDEVSFRRERLYVNKLNIILVQILKHEWPARWRSFVPDLVAAAKSSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSMNSEFQLIHELCLYVLSASQRAELIRATLATLHAFLSWIPLGYIFESPLLETLLKFFPVPAYRNLTIQCLTE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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