Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002203`

染色体: Chr07 坐标: 20279628-20283822 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002203`
名称	SmilChr07G002203
描述	uncharacterized SmilChr07G002203
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	20279628 - 20283822 / `+`

ID 对照

NCBI Gene ID	`LOC130993283`
GeneID	`130993283`
locus_tag	`-`
NCBI Name	`LOC130993283`
原始查询	`LOC130993283`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ADP-ribosylation factor B1C [Source:NCBI gene (formerly Entrezgene);Acc:821079]; symbol=ARFB1C; hit=AT3G03120; species=arabidopsis; confidence=high
产物	ADP-ribosylation factor B1C [Source:NCBI gene (formerly Entrezgene);Acc:821079]; symbol=ARFB1C; hit=AT3G03120; species=arabidopsis; confidence=high
Arabidopsis	`AT3G03120` (ARFB1C) ADP-ribosylation factor B1C [Source:NCBI gene (formerly Entrezgene);Acc:821079] identity=91.6; qcov=0.99; evalue=4.58e-132; confidence=high
Rice	`Os10g0580200` (OsARFB1c) - identity=87.5; qcov=0.995; evalue=1.32e-127; confidence=high
GO	GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005737 (cytoplasm); GO:0006886 (intracellular protein transport); GO:0016192 (vesicle-mediated transport)
KEGG	smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00025 (Arf); PF00071 (Ras); PF04670 (Gtr1_RagA); PF08477 (Roc); PF09439 (SRPRB)
InterPro	-
eggNOG	-
NR	GeneID:130993283

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Trans-golgi network	Trans-golgi network	1.00000	`XP_057774097.1`
2	Golgi apparatus	高尔基体	0.80000	`XP_057774097.1`
3	Cytosol	细胞质基质	0.60000	`XP_057774097.1`
4	Vesicle	囊泡	0.40000	`XP_057774097.1`
5	Endosome	内体	0.40000	`XP_057774097.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:20281519`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr7:20281522`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B79,C71,D6
`Chr7:20282399`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:20282411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B102,B104,B15,C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774097.1

193 aa

193

Arf

SRPRB

Roc

Ras

Gtr1_RagA

PF00025 Arf 6-176 aa PF09439 SRPRB 16-140 aa PF08477 Roc 19-129 aa PF00071 Ras 19-132 aa PF04670 Gtr1_RagA 20-130 aa

XP_057774098.1

193 aa

193

Arf

SRPRB

Roc

Ras

Gtr1_RagA

PF00025 Arf 6-176 aa PF09439 SRPRB 16-140 aa PF08477 Roc 19-129 aa PF00071 Ras 19-132 aa PF04670 Gtr1_RagA 20-130 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774097.1`	Pfam	`PF00025`	Arf	Domain	6	176	9.4e-72	240.8	ADP-ribosylation factor family
`XP_057774097.1`	Pfam	`PF09439`	SRPRB	Domain	16	140	3e-10	40.5	Signal recognition particle receptor beta subunit
`XP_057774097.1`	Pfam	`PF08477`	Roc	Domain	19	129	1.4e-12	48.6	Ras of Complex, Roc, domain of DAPkinase
`XP_057774097.1`	Pfam	`PF00071`	Ras	Domain	19	132	9.5e-11	42.3	Ras family
`XP_057774097.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	20	130	1.4e-08	35.2	Gtr1/RagA G protein conserved region
`XP_057774098.1`	Pfam	`PF00025`	Arf	Domain	6	176	9.4e-72	240.8	ADP-ribosylation factor family
`XP_057774098.1`	Pfam	`PF09439`	SRPRB	Domain	16	140	3e-10	40.5	Signal recognition particle receptor beta subunit
`XP_057774098.1`	Pfam	`PF08477`	Roc	Domain	19	129	1.4e-12	48.6	Ras of Complex, Roc, domain of DAPkinase
`XP_057774098.1`	Pfam	`PF00071`	Ras	Domain	19	132	9.5e-11	42.3	Ras family
`XP_057774098.1`	Pfam	`PF04670`	Gtr1_RagA	Domain	20	130	1.4e-08	35.2	Gtr1/RagA G protein conserved region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918115.1
TAGTAATTGACTATTTCAAGCTTTGATAATGGAAAAGGAAAAATTAAAAGCAAAAACTAAAAACAACGCAGCCCTTTCTTTTCTTTTCTTCCTCAAAGAATCTCTCTTTCTCTCTCATAGACATTTCCTGTCTTTGTAAATTTCACCAGATCATTTTCTTCAATTTCAAAGCTATTCCAACTTTTTTGTGTTTCCAATACAACATAAAACCGTGCTACTTCTCGGATCGTTTGATTTTCTCTTATTGTTTGCGTAGTGAG...

XM_057918114.1
TGACTATTTCAAGCTTTGATAATGGAAAAGGAAAAATTAAAAGCAAAAACTAAAAACAACGCAGCCCTTTCTTTTCTTTTCTTCCTCAAAGAATCTCTCTTTCTCTCTCATAGACATTTCCTGTCTTTGTAAATTTCACCAGATCATTTTCTTCAATTTCAAAGCTATTCCAACTTTTTTGTGTTTCCAATACAACATAAAACCGTGCTACTTCTCGGATCGTTTGATTTTCTCTTATTGTTTGCGTAGTGAGAGAATTG...

CDS

2 records

下载 CDS FASTA

LOC130993283
ATGGGACAAGCGTTTCGCAAGCTCTTCGATAGTTTCTTCGGCAACTCCGAGATGCGGGTTGTGATGCTTGGGCTGGATGCTGCTGGCAAGACAACTATACTGTATAAGCTTCACATTGGAGAGGTTTTATCAACTGTTCCTACCATTGGTTTTAATGTAGAGAAAGTTCAATATAAAAATGTGATCTTTACCGTGTGGGATGTTGGTGGGCAAGAGAAGTTGAGACCGTTATGGAGACATTACTTCAATAATACCGATGG...

Protein

2 records

下载 Protein FASTA

XP_057774097.1
MGQAFRKLFDSFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIDRAKAEFQAIIRDPFMLNAVILVFANKQDMKGAMTPMEVCEGLGLYDLKNRKWHIQGTCALKGDGLYEGLDWLSSTLKEHKAAGFSSVGPSSF

XP_057774098.1
MGQAFRKLFDSFFGNSEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIDRAKAEFQAIIRDPFMLNAVILVFANKQDMKGAMTPMEVCEGLGLYDLKNRKWHIQGTCALKGDGLYEGLDWLSSTLKEHKAAGFSSVGPSSF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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