Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002239`

染色体: Chr07 坐标: 20568198-20570750 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002239`
名称	SmilChr07G002239
描述	protein CLT2, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	20568198 - 20570750 / `-`

ID 对照

NCBI Gene ID	`LOC130993321`
GeneID	`130993321`
locus_tag	`-`
NCBI Name	`LOC130993321`
原始查询	`LOC130993321`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein CLT2, chloroplastic-like
产物	protein CLT2%2C chloroplastic-like
Arabidopsis	`AT4G24460` (CLT2) CRT (chloroquine-resistance transporter)-like transporter 2 [Source:NCBI gene (formerly Entrezgene);Acc:828548] identity=60.3; qcov=0.531; evalue=1.06e-20; confidence=low
Rice	`Os12g0511300` (OsCLT2) - identity=59.3; qcov=0.711; evalue=2.12e-27; confidence=medium
GO	GO:0140359 (ABC-type transporter activity)
KEGG	-
Pfam	PF08627 (CRT-like); PF19055 (ABC2_membrane_7)
InterPro	-
eggNOG	-
NR	GeneID:130993321

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057774135.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057774135.1`
3	Nucleus	细胞核	0.00000	`XP_057774138.1`
4	Chromosome	染色体	0.00000	`XP_057774138.1`
5	Centromere	着丝粒	0.00000	`XP_057774138.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:20568815`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:20569221`	`ACC`	`A`	2bp_deletion	frameshift_variant	27	A14,A5,A8,A9,B100,B109,B111,B119,B135,B16,B2,B21,B3,B53,B58,B59,B81,B87,B89,C20,C27,C44,C49,C58,C59,C68,C81
`Chr7:20569224`	`AG`	`A`	1bp_deletion	frameshift_variant	27	A14,A5,A8,A9,B100,B109,B111,B119,B135,B16,B2,B21,B3,B53,B58,B59,B81,B87,B89,C20,C27,C44,C49,C58,C59,C68,C81
`Chr7:20569707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774135.1

138 aa

138

CRT-like

ABC2_membrane_7

PF08627 CRT-like 3-109 aa PF19055 ABC2_membrane_7 76-131 aa

XP_057774136.1

138 aa

138

CRT-like

ABC2_membrane_7

PF08627 CRT-like 3-109 aa PF19055 ABC2_membrane_7 76-131 aa

XP_057774137.1

138 aa

138

CRT-like

ABC2_membrane_7

PF08627 CRT-like 3-109 aa PF19055 ABC2_membrane_7 76-131 aa

XP_057774138.1

128 aa

128

CRT-like

ABC2_membrane_7

PF08627 CRT-like 3-101 aa PF19055 ABC2_membrane_7 76-128 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774135.1`	Pfam	`PF08627`	CRT-like	Family	3	109	3.3e-11	43.5	CRT-like, chloroquine-resistance transporter-like
`XP_057774135.1`	Pfam	`PF19055`	ABC2_membrane_7	Family	76	131	5.3e-19	69.1	ABC-2 type transporter
`XP_057774136.1`	Pfam	`PF08627`	CRT-like	Family	3	109	3.3e-11	43.5	CRT-like, chloroquine-resistance transporter-like
`XP_057774136.1`	Pfam	`PF19055`	ABC2_membrane_7	Family	76	131	5.3e-19	69.1	ABC-2 type transporter
`XP_057774137.1`	Pfam	`PF08627`	CRT-like	Family	3	109	3.3e-11	43.5	CRT-like, chloroquine-resistance transporter-like
`XP_057774137.1`	Pfam	`PF19055`	ABC2_membrane_7	Family	76	131	5.3e-19	69.1	ABC-2 type transporter
`XP_057774138.1`	Pfam	`PF08627`	CRT-like	Family	3	101	7.4e-12	45.6	CRT-like, chloroquine-resistance transporter-like
`XP_057774138.1`	Pfam	`PF19055`	ABC2_membrane_7	Family	76	128	1.4e-18	67.7	ABC-2 type transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009091633.1
ATCGCTCCTTCTCTTCCTTCTCTCTCGCTCTCTCACTTTTGCTCTCTCTCCCCTCTTCTCTTTCTCTCTCTCTGCTAATCGTATAAGCGTCGTTCATCCGCAGTCGGAGGCGGAGCATCATTCTTCTCCGACGTCGGTGCTGGCGCTGGAGGCGGTTCCTCGCCGACGTAAGTGTAAAGAGAGAAAGAGGGGAAATAGAGAGATAATTAGGGTTTGCAGATCACCGTTTAAAATGAAAGGGGGTCCGGCGTCGCAACCGT...

XM_057918154.1
CGCTCTCTCACTTTTGCTCTCTCTCCCCTCTTCTCTTTCTCTCTCTCTGCTAATCGTATAAGCGTCGTTCATCCGCAGTCGGAGGCGGAGCATCATTCTTCTCCGACGTCGGTGCTGGCGCTGGAGGCGGTTCCTCGCCGACGTAAGTGTAAAGAGAGAAAGAGGGGAAATAGAGAGATAATTAGGGTTTGCAGATCACCGTTTAAAATGAAAGGGGGTCCGGCGTCGCAACCGTCGACCGCCTCAGTGGGCTCGACAAA...

CDS

4 records

下载 CDS FASTA

LOC130993321
ATGCTGGCTGTTCCCAAGTCGCCCTTTGTTGCGATTGGCTTTCTTGAATTCCTTTCTTCTATATGCGGGATGTATGCCGGAGCCATGCTTCCGGGACCAGCCATACCCTTATTATATCAAACATTCTTGGCTTGGCAACTGGTCTTTTCTAGCCTCCTGTTGGGTAAAAGATACTATTTGAACCAAATTATGGGATGCTTTCTTGTGGCAGCTGGTGTCGTAGTTGCGGTTTCAAGGGTTGGTATGCAGCTACTGCGAGA...

Protein

4 records

下载 Protein FASTA

XP_057774135.1
MLAVPKSPFVAIGFLEFLSSICGMYAGAMLPGPAIPLLYQTFLAWQLVFSSLLLGKRYYLNQIMGCFLVAAGVVVAVSRVGMQLLREAKTQAVDYLILLIVGACLGSLIKANDETFGFSAYTYTIISVFQLLMYQERD

XP_057774136.1
MLAVPKSPFVAIGFLEFLSSICGMYAGAMLPGPAIPLLYQTFLAWQLVFSSLLLGKRYYLNQIMGCFLVAAGVVVAVSRVGMQLLREAKTQAVDYLILLIVGACLGSLIKANDETFGFSAYTYTIISVFQLLMYQERD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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