当前解析结果
SmilChr07G002254| 统一新 Gene ID | SmilChr07G002254 |
|---|---|
| 名称 | SmilChr07G002254 |
| 描述 | uncharacterized SmilChr07G002254 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 20714064 - 20715725 / - |
| NCBI Gene ID | LOC130993335 |
|---|---|
| GeneID | 130993335 |
| locus_tag | - |
| NCBI Name | LOC130993335 |
| 原始查询 | LOC130993335 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | growth-regulating factor 7 [Source:NCBI gene (formerly Entrezgene);Acc:835447]; symbol=GRF7; hit=AT5G53660; species=arabidopsis; confidence=low |
| 产物 | growth-regulating factor 7 [Source:NCBI gene (formerly Entrezgene);Acc:835447]; symbol=GRF7; hit=AT5G53660; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G53660 (GRF7)growth-regulating factor 7 [Source:NCBI gene (formerly Entrezgene);Acc:835447] identity=56.5; qcov=0.443; evalue=1.19e-37; confidence=low |
| Rice | Os02g0701300 (GS2)- identity=54.2; qcov=0.429; evalue=3.77e-34; confidence=low |
| GO | GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006351 (DNA-templated transcription); GO:0006355 (regulation of DNA-templated transcription); GO:0032502 (developmental process) |
| KEGG | - |
| Pfam | PF08879 (WRC); PF08880 (QLQ) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993335 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774169.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057774169.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057774169.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057774169.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057774169.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:20714352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:20714432 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr7:20714521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr7:20714996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr7:20715145 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:20715152 |
T |
TG |
1bp_insertion | frameshift_variant | 28 | A13,A15,A2,B104,B128,B131,B44,B56,B70,B78,B82,B93,B95,B96,C19,C2,C29,C31,C40,C50,C54,C55,C57,C61,C65,C82,D11,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774169.1PF08880
QLQ 58-91 aa
PF08879
WRC 106-148 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774169.1 |
Pfam | PF08880 |
QLQ | Domain | 58 | 91 | 3.7e-14 | 52.8 | QLQ |
XP_057774169.1 |
Pfam | PF08879 |
WRC | Domain | 106 | 148 | 7.7e-21 | 74.2 | WRC |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。