Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002257`

染色体: Chr07 坐标: 20751363-20757538 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002257`
名称	SmilChr07G002257
描述	uncharacterized SmilChr07G002257
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	20751363 - 20757538 / `-`

ID 对照

NCBI Gene ID	`LOC130993339`
GeneID	`130993339`
locus_tag	`-`
NCBI Name	`LOC130993339`
原始查询	`LOC130993339`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA polymerase II degradation factor [Source:NCBI gene (formerly Entrezgene);Acc:835444]; symbol=AT5G53620; hit=AT5G53620; species=arabidopsis; confidence=high
产物	RNA polymerase II degradation factor [Source:NCBI gene (formerly Entrezgene);Acc:835444]; symbol=AT5G53620; hit=AT5G53620; species=arabidopsis; confidence=high
Arabidopsis	`AT5G53620` (AT5G53620) RNA polymerase II degradation factor [Source:NCBI gene (formerly Entrezgene);Acc:835444] identity=45.8; qcov=0.901; evalue=8.35e-169; confidence=high
Rice	`Os08g0543600` - identity=39.7; qcov=1.04; evalue=1.22e-158; confidence=medium
GO	-
KEGG	-
Pfam	PF24851 (DUF7725)
InterPro	-
eggNOG	-
NR	GeneID:130993339

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057774172.1`
2	Cytosol	细胞质基质	0.40000	`XP_057774172.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057774173.1`
4	Trans-golgi network	Trans-golgi network	0.40000	`XP_057774173.1`
5	Nucleus	细胞核	0.20000	`XP_057774172.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:20752510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr7:20752545`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:20752640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B128,B93,B99,C61,D7
`Chr7:20752671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr7:20752925`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr7:20753121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B56,B96,C82
`Chr7:20753127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B128,B93,B99,C61,D7
`Chr7:20753716`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:20754002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,C67
`Chr7:20754239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B56,B96,C82
`Chr7:20754356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C42,C61,D10
`Chr7:20754970`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774172.1

848 aa

424

848

DUF7725

PF24851 DUF7725 619-689 aa

XP_057774173.1

847 aa

424

847

DUF7725

PF24851 DUF7725 618-688 aa

XP_057774174.1

846 aa

423

846

DUF7725

PF24851 DUF7725 617-687 aa

XP_057774176.1

845 aa

422

845

DUF7725

PF24851 DUF7725 616-686 aa

XP_057774177.1

828 aa

414

828

DUF7725

PF24851 DUF7725 599-669 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774172.1`	Pfam	`PF24851`	DUF7725	Domain	619	689	1.5e-34	118.5	Domain of unknown function (DUF7725)
`XP_057774173.1`	Pfam	`PF24851`	DUF7725	Domain	618	688	1.5e-34	118.5	Domain of unknown function (DUF7725)
`XP_057774174.1`	Pfam	`PF24851`	DUF7725	Domain	617	687	1.5e-34	118.5	Domain of unknown function (DUF7725)
`XP_057774176.1`	Pfam	`PF24851`	DUF7725	Domain	616	686	1.5e-34	118.5	Domain of unknown function (DUF7725)
`XP_057774177.1`	Pfam	`PF24851`	DUF7725	Domain	599	669	1.5e-34	118.5	Domain of unknown function (DUF7725)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057918194.1
TCCAAATTTTATTCGCGAAAACCATTAATCCAATCTCTCTTCTCTCTCTCTCTCTCTCTCTTCTGTGGTATTTTTGAGTTGAAGTCCTTTAAAGCCCTTAAATTGACGGAAGCACCCCAAAAACCAATCTCCGAAACTCCACTGTCAAAAAGTGCACGACGATTCCATTACTCAATTTCAACTCTTGGTTGACCGATATTCCTCTCTGTGGATTTTTTTTCTCCCCCATTTTCTTTTTTCTCTCTATTGCTTTCCTATTT...

XM_057918193.1
TCCAAATTTTATTCGCGAAAACCATTAATCCAATCTCTCTTCTCTCTCTCTCTCTCTCTCTTCTGTGGTATTTTTGAGTTGAAGTCCTTTAAAGCCCTTAAATTGACGGAAGCACCCCAAAAACCAATCTCCGAAACTCCACTGTCAAAAAGTGCACGACGATTCCATTACTCAATTTCAACTCTTGGTTGACCGATATTCCTCTCTGTGGATTTTTTTTCTCCCCCATTTTCTTTTTTCTCTCTATTGCTTTCCTATTT...

CDS

5 records

下载 CDS FASTA

LOC130993339
ATGGAGGTGCCGCCCCCCGCCCCCACTGCCGCGCGGAATGGCGGATTTACGATGCCGCCGCTGCCCTCGTCTTCATCTCAGCCTTCTCGCAAGGAGTGGCGCGTTGTTTCCGAGCAATCGCCTCGAAACTCCGCTACCGAGCATGGGAGGGAGCCAGTGGATGTGGATTTTTGCGCTATAACTATCGATGGGGATTTGGATAACAATATTTTGCAGCAAAGACTTCATGCATTGGCAAAGAAAAGGGAGGAGTTGCAGCA...

LOC130993339
ATGGAGGTGCCGCCCCCCGCCCCCACTGCCGCGCGGAATGGCGGATTTACGATGCCGCCGCTGCCCTCGTCTTCATCTCAGCCTTCTCGCAAGGAGTGGCGCGTTGTTTCCGAGCAATCGCCTCGAAACTCCGCTACCGAGGAGTTGGATCGTTCAAAACTAGTTCAGTCCGATGAGAGATTGATATACGAGCATGGGAGGGAGCCAGTGGATGTGGATTTTTGCGCTATAACTATCGATGGGGATTTGGATAACAATAT...

Protein

5 records

下载 Protein FASTA

XP_057774172.1
MEVPPPAPTAARNGGFTMPPLPSSSSQPSRKEWRVVSEQSPRNSATEVELDRSKLVQSDERLIYEVQHGREPVDVDFCAITIDGDLDNNILQQRLHALAKKREELQHMEIELRAQNIARSEITRIHNTFDAQLKEHGNVNVKLQEQLHEKEQKIRELERKMEDKDRELHAIRLDNEAAWAKEDLLREQSKELQSYRRERDSSEAERVQHINQIRELQEHIQEKDRLFMELQEQHRIAQETIIFKEEQLREAQAWMTRAQE...

XP_057774173.1
MEVPPPAPTAARNGGFTMPPLPSSSSQPSRKEWRVVSEQSPRNSATEELDRSKLVQSDERLIYEVQHGREPVDVDFCAITIDGDLDNNILQQRLHALAKKREELQHMEIELRAQNIARSEITRIHNTFDAQLKEHGNVNVKLQEQLHEKEQKIRELERKMEDKDRELHAIRLDNEAAWAKEDLLREQSKELQSYRRERDSSEAERVQHINQIRELQEHIQEKDRLFMELQEQHRIAQETIIFKEEQLREAQAWMTRAQEM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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