当前解析结果
SmilChr07G002266| 统一新 Gene ID | SmilChr07G002266 |
|---|---|
| 名称 | SmilChr07G002266 |
| 描述 | metal-nicotianamine transporter YSL3-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 20858608 - 20862015 / - |
| NCBI Gene ID | LOC130993344 |
|---|---|
| GeneID | 130993344 |
| locus_tag | - |
| NCBI Name | LOC130993344 |
| 原始查询 | LOC130993344 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | metal-nicotianamine transporter YSL3-like |
| 产物 | metal-nicotianamine transporter YSL3-like |
| Arabidopsis | AT5G53550 (YSL3)YELLOW STRIPE like 3 [Source:NCBI gene (formerly Entrezgene);Acc:835437] identity=74.7; qcov=1.02; evalue=0; confidence=high |
| Rice | Os04g0542200 (OsYSL9)- identity=71.4; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0005886 (plasma membrane); GO:0010039 (response to iron ion); GO:0035673 (oligopeptide transmembrane transporter activity); GO:0048316 (seed development); GO:0051980 (iron-nicotianamine transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF03169 (OPT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993344 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057774182.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057774182.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057774183.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057774182.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774182.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:20858779 |
AGG |
A |
2bp_deletion | frameshift_variant | 4 | B140,B65,C28,C83 |
Chr7:20858779 |
AGG |
A |
2bp_deletion | CDS_variant | 4 | B140,B65,C28,C83 |
Chr7:20858782 |
AG |
A |
1bp_deletion | frameshift_variant | 4 | B140,B65,C28,C83 |
Chr7:20858782 |
AG |
A |
1bp_deletion | CDS_variant | 4 | B140,B65,C28,C83 |
Chr7:20858792 |
T |
TG |
1bp_insertion | frameshift_variant | 3 | B109,C27,C65 |
Chr7:20858792 |
T |
TG |
1bp_insertion | CDS_variant | 3 | B109,C27,C65 |
Chr7:20858802 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B140,B65,C28,C83 |
Chr7:20858867 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B108,B121,B24 |
Chr7:20858867 |
AT |
A |
1bp_deletion | CDS_variant | 3 | B108,B121,B24 |
Chr7:20858945 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:20859278 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C41,C74 |
Chr7:20859309 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774182.1PF03169
OPT 44-648 aa
XP_057774183.1PF03169
OPT 44-654 aa
XP_057774184.1PF03169
OPT 29-639 aa
XP_057774185.1PF03169
OPT 29-639 aa
XP_057774186.1PF03169
OPT 29-633 aa
XP_057774187.1PF03169
OPT 29-633 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774182.1 |
Pfam | PF03169 |
OPT | Family | 44 | 648 | 5.2e-149 | 498.5 | OPT oligopeptide transporter protein |
XP_057774183.1 |
Pfam | PF03169 |
OPT | Family | 44 | 654 | 2.4e-153 | 512.8 | OPT oligopeptide transporter protein |
XP_057774184.1 |
Pfam | PF03169 |
OPT | Family | 29 | 639 | 2.2e-153 | 513.0 | OPT oligopeptide transporter protein |
XP_057774185.1 |
Pfam | PF03169 |
OPT | Family | 29 | 639 | 2.2e-153 | 513.0 | OPT oligopeptide transporter protein |
XP_057774186.1 |
Pfam | PF03169 |
OPT | Family | 29 | 633 | 4.8e-149 | 498.6 | OPT oligopeptide transporter protein |
XP_057774187.1 |
Pfam | PF03169 |
OPT | Family | 29 | 633 | 4.8e-149 | 498.6 | OPT oligopeptide transporter protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。