Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002288`

染色体: Chr07 坐标: 21158327-21161068 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002288`
名称	SmilChr07G002288
描述	uncharacterized SmilChr07G002288
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	21158327 - 21161068 / `-`

ID 对照

NCBI Gene ID	`LOC130993368`
GeneID	`130993368`
locus_tag	`-`
NCBI Name	`LOC130993368`
原始查询	`LOC130993368`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ribonuclease P protein subunit P38-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835381]; symbol=AT5G53020; hit=AT5G53020; species=arabidopsis; confidence=low
产物	Ribonuclease P protein subunit P38-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835381]; symbol=AT5G53020; hit=AT5G53020; species=arabidopsis; confidence=low
Arabidopsis	`AT5G53020` (AT5G53020) Ribonuclease P protein subunit P38-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835381] identity=52.2; qcov=0.36; evalue=5.33e-50; confidence=low
Rice	`Os03g0853600` - identity=36.4; qcov=0.301; evalue=5.4e-21; confidence=low
GO	-
KEGG	-
Pfam	PF28715 (DUF8445)
InterPro	-
eggNOG	-
NR	GeneID:130993368

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus membrane	核膜	0.60000	`XP_057774213.1`
2	Nucleus	细胞核	0.40000	`XP_057774213.1`
3	Cytoplasm	细胞质	0.20000	`XP_057774213.1`
4	Chromosome	染色体	0.00000	`XP_057774213.1`
5	Centromere	着丝粒	0.00000	`XP_057774213.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:21158563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr7:21158607`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B113,B36
`Chr7:21158680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr7:21159196`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B65,B73,C12,C83
`Chr7:21159297`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B102,B15,C51
`Chr7:21159734`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C11,C13,C25,C69
`Chr7:21160032`	`ACT`	`A`	2bp_deletion	frameshift_variant	1	C67
`Chr7:21160032`	`ACT`	`A`	2bp_deletion	CDS_variant	1	C67
`Chr7:21160062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774213.1

587 aa

294

587

DUF8445

PF28715 DUF8445 409-583 aa

XP_057774215.1

587 aa

294

587

DUF8445

PF28715 DUF8445 409-583 aa

XP_057774216.1

575 aa

288

575

DUF8445

PF28715 DUF8445 397-571 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774213.1`	Pfam	`PF28715`	DUF8445	Repeat	409	583	2.6e-47	161.7	Domain of unknown function (DUF8445)
`XP_057774215.1`	Pfam	`PF28715`	DUF8445	Repeat	409	583	2.6e-47	161.7	Domain of unknown function (DUF8445)
`XP_057774216.1`	Pfam	`PF28715`	DUF8445	Repeat	397	571	2.5e-47	161.7	Domain of unknown function (DUF8445)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057918233.1
AAACATTTGAACTTGAAAACAAAGTTTCATACTTACTACTTACTAGTCTAACTGATCTTGTACAAATATGGCAGTAGCTTAGTTGTTTTTGCATGCAAGTTGGGTCCATGTTGCAGAAAATAGATGGACAGCCAAACACATCTGGAAAGTATTTTTTGTATTATTACTATGATAAAGATTGATACTTTGATAGAGATGTCACATAGTAGTAATATTTTTGTGGGTAATTTCAAACTAGCAGCAGTCACATACAAATCCCC...

XM_057918232.1
AGCCCATTTCCCCCCATCACCACAACCAAAACACTGAAGAAAAAAATATAAAAAAGTAGACAAAAAGAAAGGTCATTTTCAGCACTGAAATTCAGGGAATAAATATACAGTTACAGCCACTGATCTTGCACGACTTTCACACGTGTGAAAAAACCCACATGCTTTAGTTGTTACCTGACAATTTTAATTAATAAAAACATAACTGCAAGTCTACAACAACCAGCAGATGCCACCAGCTTTCAGTTGTGTTTTCTGAGTGA...

CDS

3 records

下载 CDS FASTA

LOC130993368
ATGGAAGAAAAGGGTGTCTCAGGTTCCTTGATAGTCATATCGGAGAAGAATTCCGATAGGTTGTATCCGATGTTCATCGGTGTTTCGTGCGCGCTTTTCGTTCTACGGCTACTGCCGGAGCCCGAAATCTGCGACGAAAAATGGTCGGAAATAAGGAATGGGATGCTCAAAGGCAGTGCCCTTGTCGGATTGCTTGTTTCGACGGTTGAAAAATCGAAGCTTCTAGAGAAACTGGAGAATGCAGAAATGGAGATAGCGGA...

Protein

3 records

下载 Protein FASTA

XP_057774213.1
MEEKGVSGSLIVISEKNSDRLYPMFIGVSCALFVLRLLPEPEICDEKWSEIRNGMLKGSALVGLLVSTVEKSKLLEKLENAEMEIAELKKRRSEDAKANEKVVSIFAAREQSWFDERRKLSHQIFSLMNDLKVVEAKRENSVSELGDKMKEIEVILQLKDTMIEEAERRRLESEEKLKEAHHLAEELRESHSSEISKHKTAFIEQVEAAKQEVEALLEHKEQLLLVNQMLLKQVRSSKLKRKQAEVEAARWKAVAESKHD...

XP_057774215.1
MEEKGVSGSLIVISEKNSDRLYPMFIGVSCALFVLRLLPEPEICDEKWSEIRNGMLKGSALVGLLVSTVEKSKLLEKLENAEMEIAELKKRRSEDAKANEKVVSIFAAREQSWFDERRKLSHQIFSLMNDLKVVEAKRENSVSELGDKMKEIEVILQLKDTMIEEAERRRLESEEKLKEAHHLAEELRESHSSEISKHKTAFIEQVEAAKQEVEALLEHKEQLLLVNQMLLKQVRSSKLKRKQAEVEAARWKAVAESKHD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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