当前解析结果
SmilChr07G002305| 统一新 Gene ID | SmilChr07G002305 |
|---|---|
| 名称 | SmilChr07G002305 |
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 21329246 - 21331388 / + |
| NCBI Gene ID | LOC130993383 |
|---|---|
| GeneID | 130993383 |
| locus_tag | - |
| NCBI Name | LOC130993383 |
| 原始查询 | LOC130993383 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7 |
| 产物 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7 |
| Arabidopsis | AT1G66910 (AT1G66910)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843009] identity=30.9; qcov=1.04; evalue=2.04e-69; confidence=low |
| Rice | Os01g0117600- identity=32.4; qcov=1.06; evalue=1.9e-79; confidence=low |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind); PF14380 (WAK_assoc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993383 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057774238.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057774238.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774238.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774238.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774238.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:21329295 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B20 |
Chr7:21329295 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B20 |
Chr7:21329404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B32,B64,C53,C8 |
Chr7:21329739 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr7:21329983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:21330258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B70,C40,C55 |
Chr7:21330622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr7:21330723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B113 |
Chr7:21330845 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr7:21330931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B88,C14 |
Chr7:21331133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B18,B23,C63,C87 |
Chr7:21331240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,B15,B5,B62,C51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774238.1PF13947
GUB_WAK_bind 25-89 aa
PF14380
WAK_assoc 152-241 aa
PF07714
PK_Tyr_Ser-Thr 332-575 aa
PF00069
Pkinase 333-572 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774238.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 25 | 89 | 6.7e-17 | 62.3 | Wall-associated receptor kinase galacturonan-binding |
XP_057774238.1 |
Pfam | PF14380 |
WAK_assoc | Domain | 152 | 241 | 1.4e-06 | 29.7 | Wall-associated receptor kinase C-terminal |
XP_057774238.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 332 | 575 | 4.4e-29 | 102.3 | Protein tyrosine and serine/threonine kinase |
XP_057774238.1 |
Pfam | PF00069 |
Pkinase | Domain | 333 | 572 | 2.7e-27 | 96.5 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。