Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002316`

染色体: Chr07 坐标: 21425929-21429860 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002316`
名称	SmilChr07G002316
描述	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	21425929 - 21429860 / `-`

ID 对照

NCBI Gene ID	`LOC130993394`
GeneID	`130993394`
locus_tag	`-`
NCBI Name	`LOC130993394`
原始查询	`LOC130993394`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
产物	RNA polymerase sigma factor sigE%2C chloroplastic/mitochondrial-like
Arabidopsis	`AT5G24120` (SIGE) sigma factor E [Source:NCBI gene (formerly Entrezgene);Acc:832477] identity=61; qcov=1.02; evalue=0; confidence=high
Rice	`Os05g0586600` (OsSIG5) - identity=52.2; qcov=0.82; evalue=3.07e-150; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006352 (DNA-templated transcription initiation); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF04539 (Sigma70_r3); PF04542 (Sigma70_r2); PF04545 (Sigma70_r4)
InterPro	-
eggNOG	-
NR	GeneID:130993394

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057774250.1`
2	Mitochondrion	线粒体	0.40000	`XP_057774250.1`
3	Nucleus	细胞核	0.00000	`XP_057774250.1`
4	Chromosome	染色体	0.00000	`XP_057774250.1`
5	Centromere	着丝粒	0.00000	`XP_057774250.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:21426612`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B113,C46
`Chr7:21426700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,B26
`Chr7:21428117`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B120
`Chr7:21428117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr7:21428406`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr7:21428715`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:21429101`	`ATT`	`A`	2bp_deletion	frameshift_variant	75	A14,A20,A21,A22,A23,A8,A9,B1,B102,B105,B108,B11,B110,B115,B119,B12,B121,B122,B124,B129,B132,B136,B138,B140,B17,B20,B21,B25,B26,B3,B31,B37,B41,B44,B47,B55,B59,B66,B69,B72,B73,B75,B81,B86,B88,B91,B93,C10,C14,C17,C19,C24,C26,C27,C28,C30,C31,C37,C38,C4,C41,C43,C5,C51,C52,C57,C59,C65,C74,C76,C83,C86,C9,D11,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774250.1

582 aa

291

582

Sigma70_r2

Sigma70_r3

Sigma70_r4

PF04542 Sigma70_r2 348-414 aa PF04539 Sigma70_r3 432-495 aa PF04545 Sigma70_r4 517-570 aa

XP_057774251.1

516 aa

258

516

Sigma70_r2

Sigma70_r3

Sigma70_r4

PF04542 Sigma70_r2 282-348 aa PF04539 Sigma70_r3 366-429 aa PF04545 Sigma70_r4 451-504 aa

XP_057774252.1

516 aa

258

516

Sigma70_r2

Sigma70_r3

Sigma70_r4

PF04542 Sigma70_r2 282-348 aa PF04539 Sigma70_r3 366-429 aa PF04545 Sigma70_r4 451-504 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774250.1`	Pfam	`PF04542`	Sigma70_r2	Domain	348	414	7.1e-11	42.4	Sigma-70 region 2
`XP_057774250.1`	Pfam	`PF04539`	Sigma70_r3	Family	432	495	5.8e-13	49.5	Sigma-70 region 3
`XP_057774250.1`	Pfam	`PF04545`	Sigma70_r4	Domain	517	570	3.2e-13	49.7	Sigma-70, region 4
`XP_057774251.1`	Pfam	`PF04542`	Sigma70_r2	Domain	282	348	6e-11	42.7	Sigma-70 region 2
`XP_057774251.1`	Pfam	`PF04539`	Sigma70_r3	Family	366	429	3.6e-13	50.1	Sigma-70 region 3
`XP_057774251.1`	Pfam	`PF04545`	Sigma70_r4	Domain	451	504	2.5e-13	50.1	Sigma-70, region 4
`XP_057774252.1`	Pfam	`PF04542`	Sigma70_r2	Domain	282	348	6e-11	42.7	Sigma-70 region 2
`XP_057774252.1`	Pfam	`PF04539`	Sigma70_r3	Family	366	429	3.6e-13	50.1	Sigma-70 region 3
`XP_057774252.1`	Pfam	`PF04545`	Sigma70_r4	Domain	451	504	2.5e-13	50.1	Sigma-70, region 4

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057918269.1
GTGAGGTCGTGGCCCCACAAAAATTGTGTAGCAAATGTACGTCTCTTTTTTTCCTTAGAAGGATCAAGGAGCCCGTGGCTAGAACACTATCCACAACTACAAAACACCCCACGCAAAATATCGGCCCTTCCACTCTCAGCCTGCCACGTCACAAATTCACTCATACCCATTCCTTGCTGGAGTATCACCCCTAGCTGACATGGACATTTCTTGCTTCGTCGATCTATTGTCTGTCTATTTTCAGCCGTAGATATTTACGT...

XM_057918268.1
TGGAGTATCACCCCTAGCTGACATGGACATTTCTTGCTTCGTCGATCTATTGTCTGTCTATTTTCAGCCGTAGATATTTACGTTAAAAAAGCTTGTGGGCACCGAAATTCCGGGGAGAATTTATATTTTTATGAACCAAAATCTCCCACTCCGTTGAGCTTCTTTCCTTTCACCACCGGAATATTCCGTCGTCGGCGAAGAACCTTCCTGTCCTCTCGGCTGCTTGGATTTGTGATCGTTCTCCCATACTTGCTCAGTAA...

CDS

3 records

下载 CDS FASTA

LOC130993394
ATGACTCGTGATAGAATTACACTATATAACTCTTACGGTTTCTATTGCTACATCAAAATTCAAATGATACGTTTTCACTTCCTTAGGCTTTTGATTTCTTCGTATTTTGATATTTTTGTACTTAGCGTTAATTTCATGGGATTGATTGTTCAGCGCTTGTATAACTTTGGTAGTAAATATTTGGATCACAGTTTTGGCATGGGATTGGTGTCTGTTTCTAGTTCTGCTGCACGAACTCCCTTGGAAGTAGGTGCAAAATA...

LOC130993394
ATGGGATTGGTGTCTGTTTCTAGTTCTGCTGCACGAACTCCCTTGGAAGTAGGTGCAAAATATTTGGCTCGTGAATCTTTATCTAGAAGACCAATTGTATTATCATTTCAAAAGGATAAAACTAAGAATTTAGCTCTAATTGCGCCTAAAGAATCTATAGCTTTACCTTTGGAGACAAATAAAGGAAACCAAAAGAGGTTAAGGAAGGGGAAAAAGCGGCCAGAACCAGTAAATGTGGTTTTAACAGACCAAGCATCTCC...

Protein

3 records

下载 Protein FASTA

XP_057774250.1
MTRDRITLYNSYGFYCYIKIQMIRFHFLRLLISSYFDIFVLSVNFMGLIVQRLYNFGSKYLDHSFGMGLVSVSSSAARTPLEVGAKYLARESLSRRPIVLSFQKDKTKNLALIAPKESIALPLETNKGNQKRLRKGKKRPEPVNVVLTDQASPSTSDLDYNEAAAKLEHIFKHSPTKAISVDEVKDRRIKRRQPPRKRTGETVETERKTADSVVRNQKKKESRLTLEKRIALRTKKAGESVASSQKIKHGNHDEVEKTNR...

XP_057774251.1
MGLVSVSSSAARTPLEVGAKYLARESLSRRPIVLSFQKDKTKNLALIAPKESIALPLETNKGNQKRLRKGKKRPEPVNVVLTDQASPSTSDLDYNEAAAKLEHIFKHSPTKAISVDEVKDRRIKRRQPPRKRTGETVETERKTADSVVRNQKKKESRLTLEKRIALRTKKAGESVASSQKIKHGNHDEVEKTNRLVRDYSASSDLVSLDWKKMKIPPVLPSSEHAWLFKLMQPMKEILQLKASVQNDLGKELTDGELANA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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