当前解析结果
SmilChr07G002319| 统一新 Gene ID | SmilChr07G002319 |
|---|---|
| 名称 | SmilChr07G002319 |
| 描述 | mitochondrial carrier protein MTM1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 21456226 - 21464181 / - |
| NCBI Gene ID | LOC130993399 |
|---|---|
| GeneID | 130993399 |
| locus_tag | - |
| NCBI Name | LOC130993399 |
| 原始查询 | LOC130993399 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitochondrial carrier protein MTM1 |
| 产物 | mitochondrial carrier protein MTM1 |
| Arabidopsis | AT4G27940 (MTM1)manganese tracking factor for mitochondrial SOD2 [Source:NCBI gene (formerly Entrezgene);Acc:828907] identity=65.9; qcov=0.995; evalue=0; confidence=high |
| Rice | Os08g0386800 (P0434E03.16-1)- identity=70.7; qcov=0.853; evalue=0; confidence=high |
| GO | GO:1990542 (mitochondrial transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993399 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057774261.1 |
| 2 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057774261.1 |
| 3 | Mitochondrion membrane | 线粒体膜 | 0.80000 | XP_057774261.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057774261.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774261.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:21456781 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr7:21456805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr7:21458284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B56,B8,B96 |
Chr7:21458286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B73,C12,C57,C86 |
Chr7:21459214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B113,C46,C61,C84 |
Chr7:21459259 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B56,B8,B96,C82 |
Chr7:21460692 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B56,B8,B96,C82 |
Chr7:21460707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B56,B8,B96,C82 |
Chr7:21463237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B56,B96,C82 |
Chr7:21463254 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr7:21463336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B10,B113,C46,C61,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774261.1PF00153
Mito_carr 62-100 aa
PF00153
Mito_carr 150-196 aa
PF00153
Mito_carr 208-309 aa
PF00153
Mito_carr 323-412 aa
XP_057774262.1PF00153
Mito_carr 62-100 aa
PF00153
Mito_carr 150-196 aa
PF00153
Mito_carr 208-309 aa
PF00153
Mito_carr 323-412 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774261.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 62 | 100 | 1.4e-50 | 169.7 | Mitochondrial carrier protein |
XP_057774261.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 150 | 196 | 1.4e-50 | 169.7 | Mitochondrial carrier protein |
XP_057774261.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 208 | 309 | 1.4e-50 | 169.7 | Mitochondrial carrier protein |
XP_057774261.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 323 | 412 | 1.4e-50 | 169.7 | Mitochondrial carrier protein |
XP_057774262.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 62 | 100 | 1.4e-50 | 169.7 | Mitochondrial carrier protein |
XP_057774262.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 150 | 196 | 1.4e-50 | 169.7 | Mitochondrial carrier protein |
XP_057774262.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 208 | 309 | 1.4e-50 | 169.7 | Mitochondrial carrier protein |
XP_057774262.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 323 | 412 | 1.4e-50 | 169.7 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。