当前解析结果
SmilChr07G002353| 统一新 Gene ID | SmilChr07G002353 |
|---|---|
| 名称 | SmilChr07G002353 |
| 描述 | heat shock protein 83 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 21840875 - 21844058 / - |
| NCBI Gene ID | LOC130993423 |
|---|---|
| GeneID | 130993423 |
| locus_tag | - |
| NCBI Name | LOC130993423 |
| 原始查询 | LOC130993423 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heat shock protein 83 |
| 产物 | heat shock protein 83 |
| Arabidopsis | AT5G52640 (HSP90.1)heat shock-like protein [Source:NCBI gene (formerly Entrezgene);Acc:835341] identity=88.9; qcov=1; evalue=0; confidence=high |
| Rice | Os09g0482600 (OsHsp90)- identity=84.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005829 (cytosol); GO:0005886 (plasma membrane); GO:0006457 (protein folding); GO:0016887 (ATP hydrolysis activity); GO:0032991 (protein-containing complex); GO:0034605 (cellular response to heat); GO:0048471 (perinuclear region of cytoplasm); GO:0050821 (protein stabilization); GO:0051082 (GO:0051082); GO:0140662 (ATP-dependent protein folding chaperone) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00183 (HSP90); PF02518 (HATPase_c); PF13589 (HATPase_c_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993423 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057774285.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057774285.1 |
| 3 | Melanosome | Melanosome | 0.60000 | XP_057774285.1 |
| 4 | Nucleus | 细胞核 | 0.40000 | XP_057774285.1 |
| 5 | Nucleoplasm | 核质 | 0.20000 | XP_057774285.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:21841095 |
TGC |
T |
2bp_deletion | frameshift_variant | 7 | A2,A4,B135,B20,B27,C37,C86 |
Chr7:21841099 |
C |
CCT |
2bp_insertion | frameshift_variant | 4 | A2,A4,B135,C86 |
Chr7:21841099 |
C |
CCT |
2bp_insertion | CDS_variant | 4 | A2,A4,B135,C86 |
Chr7:21841123 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | A4,C86 |
Chr7:21841123 |
AG |
A |
1bp_deletion | CDS_variant | 2 | A4,C86 |
Chr7:21841125 |
CAT |
C |
2bp_deletion | frameshift_variant | 2 | A4,C86 |
Chr7:21841125 |
CAT |
C |
2bp_deletion | CDS_variant | 2 | A4,C86 |
Chr7:21841136 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr7:21841139 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr7:21841180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C18 |
Chr7:21841381 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr7:21841438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,B99 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774285.1PF02518
HATPase_c 29-181 aa
PF13589
HATPase_c_3 32-146 aa
PF00183
HSP90 184-693 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774285.1 |
Pfam | PF02518 |
HATPase_c | Domain | 29 | 181 | 4.9e-08 | 34.1 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057774285.1 |
Pfam | PF13589 |
HATPase_c_3 | Domain | 32 | 146 | 4.3e-08 | 34.0 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057774285.1 |
Pfam | PF00183 |
HSP90 | Family | 184 | 693 | 1.3e-240 | 800.4 | Hsp90 protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。