Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002361`

染色体: Chr07 坐标: 21923974-21928769 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002361`
名称	SmilChr07G002361
描述	protein ALP1-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	21923974 - 21928769 / `-`

ID 对照

NCBI Gene ID	`LOC130993440`
GeneID	`130993440`
locus_tag	`-`
NCBI Name	`LOC130993440`
原始查询	`LOC130993440`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein ALP1-like
产物	protein ALP1-like
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=33.1; qcov=0.899; evalue=7.29e-59; confidence=low
Rice	`Os08g0106900` - identity=40; qcov=0.961; evalue=7.26e-84; confidence=medium
GO	-
KEGG	-
Pfam	PF01609 (DDE_Tnp_1); PF13359 (DDE_Tnp_4); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:130993440

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774301.1`
2	Chromosome	染色体	0.40000	`XP_057774301.1`
3	Telomere	端粒	0.20000	`XP_057774301.1`
4	Centromere	着丝粒	0.00000	`XP_057774301.1`
5	Chromatin	染色质	0.00000	`XP_057774301.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:21924801`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	B106,C19
`Chr7:21924801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,C19
`Chr7:21924818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C18,C35
`Chr7:21924918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B55,B70,C55,C83
`Chr7:21925027`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A15,B4,B51,C39
`Chr7:21925031`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B128,B29,C15
`Chr7:21925050`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr7:21925064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B120,B62,D7
`Chr7:21925130`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr7:21925355`	`C`	`CTA`	2bp_insertion	frameshift_variant	3	B18,B3,C61
`Chr7:21925355`	`C`	`CTA`	2bp_insertion	CDS_variant	3	B18,B3,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774301.1

406 aa

203

406

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-151 aa PF01609 DDE_Tnp_1 176-343 aa PF13359 DDE_Tnp_4 183-340 aa

XP_057774302.1

406 aa

203

406

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-151 aa PF01609 DDE_Tnp_1 176-343 aa PF13359 DDE_Tnp_4 183-340 aa

XP_057774303.1

406 aa

203

406

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-151 aa PF01609 DDE_Tnp_1 176-343 aa PF13359 DDE_Tnp_4 183-340 aa

XP_057774304.1

406 aa

203

406

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-151 aa PF01609 DDE_Tnp_1 176-343 aa PF13359 DDE_Tnp_4 183-340 aa

XP_057774305.1

406 aa

203

406

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-151 aa PF01609 DDE_Tnp_1 176-343 aa PF13359 DDE_Tnp_4 183-340 aa

XP_057774306.1

406 aa

203

406

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-151 aa PF01609 DDE_Tnp_1 176-343 aa PF13359 DDE_Tnp_4 183-340 aa

XP_057774307.1

406 aa

203

406

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-151 aa PF01609 DDE_Tnp_1 176-343 aa PF13359 DDE_Tnp_4 183-340 aa

XP_057774308.1

406 aa

203

406

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-151 aa PF01609 DDE_Tnp_1 176-343 aa PF13359 DDE_Tnp_4 183-340 aa

XP_057774309.1

406 aa

203

406

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-151 aa PF01609 DDE_Tnp_1 176-343 aa PF13359 DDE_Tnp_4 183-340 aa

XP_057774310.1

406 aa

203

406

DUF8040

DDE_Tnp_1

DDE_Tnp_4

PF26138 DUF8040 66-151 aa PF01609 DDE_Tnp_1 176-343 aa PF13359 DDE_Tnp_4 183-340 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774301.1`	Pfam	`PF26138`	DUF8040	Domain	66	151	2e-23	82.8	Domain of unknown function (DUF8040)
`XP_057774301.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	176	343	6.4e-09	36.6	Transposase DDE domain
`XP_057774301.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	340	1.6e-22	80.6	DDE superfamily endonuclease
`XP_057774302.1`	Pfam	`PF26138`	DUF8040	Domain	66	151	2e-23	82.8	Domain of unknown function (DUF8040)
`XP_057774302.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	176	343	6.4e-09	36.6	Transposase DDE domain
`XP_057774302.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	340	1.6e-22	80.6	DDE superfamily endonuclease
`XP_057774303.1`	Pfam	`PF26138`	DUF8040	Domain	66	151	2e-23	82.8	Domain of unknown function (DUF8040)
`XP_057774303.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	176	343	6.4e-09	36.6	Transposase DDE domain
`XP_057774303.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	340	1.6e-22	80.6	DDE superfamily endonuclease
`XP_057774304.1`	Pfam	`PF26138`	DUF8040	Domain	66	151	2e-23	82.8	Domain of unknown function (DUF8040)
`XP_057774304.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	176	343	6.4e-09	36.6	Transposase DDE domain
`XP_057774304.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	340	1.6e-22	80.6	DDE superfamily endonuclease
`XP_057774305.1`	Pfam	`PF26138`	DUF8040	Domain	66	151	2e-23	82.8	Domain of unknown function (DUF8040)
`XP_057774305.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	176	343	6.4e-09	36.6	Transposase DDE domain
`XP_057774305.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	340	1.6e-22	80.6	DDE superfamily endonuclease
`XP_057774306.1`	Pfam	`PF26138`	DUF8040	Domain	66	151	2e-23	82.8	Domain of unknown function (DUF8040)
`XP_057774306.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	176	343	6.4e-09	36.6	Transposase DDE domain
`XP_057774306.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	340	1.6e-22	80.6	DDE superfamily endonuclease
`XP_057774307.1`	Pfam	`PF26138`	DUF8040	Domain	66	151	2e-23	82.8	Domain of unknown function (DUF8040)
`XP_057774307.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	176	343	6.4e-09	36.6	Transposase DDE domain
`XP_057774307.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	340	1.6e-22	80.6	DDE superfamily endonuclease
`XP_057774308.1`	Pfam	`PF26138`	DUF8040	Domain	66	151	2e-23	82.8	Domain of unknown function (DUF8040)
`XP_057774308.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	176	343	6.4e-09	36.6	Transposase DDE domain
`XP_057774308.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	340	1.6e-22	80.6	DDE superfamily endonuclease
`XP_057774309.1`	Pfam	`PF26138`	DUF8040	Domain	66	151	2e-23	82.8	Domain of unknown function (DUF8040)
`XP_057774309.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	176	343	6.4e-09	36.6	Transposase DDE domain
`XP_057774309.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	340	1.6e-22	80.6	DDE superfamily endonuclease
`XP_057774310.1`	Pfam	`PF26138`	DUF8040	Domain	66	151	2e-23	82.8	Domain of unknown function (DUF8040)
`XP_057774310.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	176	343	6.4e-09	36.6	Transposase DDE domain
`XP_057774310.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	183	340	1.6e-22	80.6	DDE superfamily endonuclease

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XM_057918324.1
TCTTCCAGCGTAGAACAGTCGGCCCATGATTATGCAAAGGCCCGGTCTTATTTAGCGAGATTAATCCCGTTTACATATACCGCAACCCCCCTCTGATACGCAAACTACCCAATTTTCCTTGCAGCCAAATCTCATTTTTGCCCTCAAATTCAAATCTAATATGCAAACCACCTGTGGCATTCGTGTTTCAGTTTAGAAATTTTCCCTCGAAGAACCCTTTTCTATACGAATTCAAAGAATCGGAAGCCCTCAAATTTCCC...

XM_057918322.1
TCTTCCAGCGTAGAACAGTCGGCCCATGATTATGCAAAGGCCCGGTCTTATTTAGCGAGATTAATCCCGTTTACATATACCGCAACCCCCCTCTGATACGCAAACTACCCAATTTTCCTTGCAGCCAAATCTCATTTTTGCCCTCAAATTCAAATCTAATATGCAAACCACCTGTGGCATTCGTGTTTCAGTTTAGAAATTTTCCCTCGAAGAACCCTTTTCTATACGAATTCAAAGAATCGGAAGCCCTCAAATTTCCC...

CDS

10 records

下载 CDS FASTA

LOC130993440
ATGCCTGGTGGAGAAAGAGCACGTTTGAATGATATTTGGTTCTTGTTACTGCAATTAATAATGCGACTGCATATTCTTAAGATGGCCTTTGTAATTATTTATTTTTCTGAGTCTAGATCAAGGAAAAGAAAACGTGCGAATGGTGTATTAAAATATGAAATAGTAAGTAGAGTACCTGACCAAATTAAGCATTTACGCCGGATGATAGGTACCAATGACATAGATTGCATTGTCAATTTGCGTATGGACCGTAATACATT...

Protein

10 records

下载 Protein FASTA

XP_057774301.1
MPGGERARLNDIWFLLLQLIMRLHILKMAFVIIYFSESRSRKRKRANGVLKYEIVSRVPDQIKHLRRMIGTNDIDCIVNLRMDRNTFGRLCHILRELGGLVEGRYVSVEEQVAMFLSVLAHHKKNRVVRFDFWRSGQTISHYVHAVLGAILKLHQFFLSKPKVVPDDCTDPRWQWFKGCLGALDGTYINVTVSNNVKPRYRTRKWQISTNVLGVCDRDMKFVYILSGWEGSAADSRILRDALNRPHGFKVPKGNYYLCDN...

XP_057774302.1
MPGGERARLNDIWFLLLQLIMRLHILKMAFVIIYFSESRSRKRKRANGVLKYEIVSRVPDQIKHLRRMIGTNDIDCIVNLRMDRNTFGRLCHILRELGGLVEGRYVSVEEQVAMFLSVLAHHKKNRVVRFDFWRSGQTISHYVHAVLGAILKLHQFFLSKPKVVPDDCTDPRWQWFKGCLGALDGTYINVTVSNNVKPRYRTRKWQISTNVLGVCDRDMKFVYILSGWEGSAADSRILRDALNRPHGFKVPKGNYYLCDN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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