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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002366

染色体: Chr07 坐标: 21971754-22034477 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002366
名称SmilChr07G002366
描述origin of replication complex subunit 2-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向21971754 - 22034477 / -

ID 对照

NCBI Gene IDLOC130993450
GeneID130993450
locus_tag-
NCBI NameLOC130993450
原始查询LOC130993450

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述origin of replication complex subunit 2-like
产物origin of replication complex subunit 2-like
ArabidopsisAT2G37560 (ORC2)
origin recognition complex second largest subunit 2 [Source:NCBI gene (formerly Entrezgene);Acc:818332]
identity=65.9; qcov=0.978; evalue=1.22e-171; confidence=high
RiceOs03g0184700 (OsORC2)
-
identity=61.8; qcov=0.997; evalue=2.04e-167; confidence=high
GOGO:0003688 (DNA replication origin binding); GO:0005634 (nucleus); GO:0005664 (nuclear origin of replication recognition complex); GO:0006260 (DNA replication)
KEGG-
PfamPF04084 (RecA-like_ORC2); PF24882 (WHD_ORC2)
InterPro-
eggNOG-
NRGeneID:130993450

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057774325.1
2 Nucleoplasm 核质 0.80000 XP_057774326.1
3 Cytoplasm 细胞质 0.60000 XP_057774326.1
4 Chromosome 染色体 0.40000 XP_057774325.1
5 Cytosol 细胞质基质 0.20000 XP_057774325.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:21971973 G A EMS_canonical_SNV CDS_variant 2 B108,B55
Chr7:21971975 C T EMS_canonical_SNV CDS_variant 1 B26
Chr7:21972005 C T EMS_canonical_SNV CDS_variant 2 C57,C86
Chr7:21972009 C T EMS_canonical_SNV CDS_variant 5 B101,B137,C23,C60,D5
Chr7:21972011 C T EMS_canonical_SNV CDS_variant 4 B49,B60,B79,C36
Chr7:21972035 G A EMS_canonical_SNV CDS_variant 1 D7
Chr7:21972103 G A EMS_canonical_SNV CDS_variant 5 B108,B119,B122,B81,C14
Chr7:21972214 G A EMS_canonical_SNV CDS_variant 2 A21,D11
Chr7:21972218 C T EMS_canonical_SNV CDS_variant 3 B70,C40,C55
Chr7:21972274 G A EMS_canonical_SNV CDS_variant 2 B35,B99
Chr7:21972351 G A EMS_canonical_SNV CDS_variant 4 A9,B70,C40,C55
Chr7:21972384 G A EMS_canonical_SNV CDS_variant 5 A19,B28,B65,C12,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774325.1
371 aa
N
1
186
371
RecA-like_ORC2
WHD_ORC2
C
PF04084 RecA-like_ORC2 70-248 aa PF24882 WHD_ORC2 301-360 aa
XP_057774326.1
360 aa
N
1
180
360
RecA-like_ORC2
WHD_ORC2
C
PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 290-349 aa
XP_057774327.1
360 aa
N
1
180
360
RecA-like_ORC2
WHD_ORC2
C
PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 290-349 aa
XP_057774328.1
360 aa
N
1
180
360
RecA-like_ORC2
WHD_ORC2
C
PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 290-349 aa
XP_057774329.1
360 aa
N
1
180
360
RecA-like_ORC2
WHD_ORC2
C
PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 290-349 aa
XP_057774330.1
360 aa
N
1
180
360
RecA-like_ORC2
WHD_ORC2
C
PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 290-349 aa
XP_057774331.1
360 aa
N
1
180
360
RecA-like_ORC2
WHD_ORC2
C
PF04084 RecA-like_ORC2 59-237 aa PF24882 WHD_ORC2 290-349 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057774325.1 Pfam PF04084 RecA-like_ORC2 Domain 70 248 5.3e-51 173.4 Origin recognition complex subunit 2 RecA-like domain
XP_057774325.1 Pfam PF24882 WHD_ORC2 Domain 301 360 3.6e-22 78.4 ORC2 WHD
XP_057774326.1 Pfam PF04084 RecA-like_ORC2 Domain 59 237 5e-51 173.5 Origin recognition complex subunit 2 RecA-like domain
XP_057774326.1 Pfam PF24882 WHD_ORC2 Domain 290 349 3.5e-22 78.5 ORC2 WHD
XP_057774327.1 Pfam PF04084 RecA-like_ORC2 Domain 59 237 5e-51 173.5 Origin recognition complex subunit 2 RecA-like domain
XP_057774327.1 Pfam PF24882 WHD_ORC2 Domain 290 349 3.5e-22 78.5 ORC2 WHD
XP_057774328.1 Pfam PF04084 RecA-like_ORC2 Domain 59 237 5e-51 173.5 Origin recognition complex subunit 2 RecA-like domain
XP_057774328.1 Pfam PF24882 WHD_ORC2 Domain 290 349 3.5e-22 78.5 ORC2 WHD
XP_057774329.1 Pfam PF04084 RecA-like_ORC2 Domain 59 237 5e-51 173.5 Origin recognition complex subunit 2 RecA-like domain
XP_057774329.1 Pfam PF24882 WHD_ORC2 Domain 290 349 3.5e-22 78.5 ORC2 WHD
XP_057774330.1 Pfam PF04084 RecA-like_ORC2 Domain 59 237 5e-51 173.5 Origin recognition complex subunit 2 RecA-like domain
XP_057774330.1 Pfam PF24882 WHD_ORC2 Domain 290 349 3.5e-22 78.5 ORC2 WHD
XP_057774331.1 Pfam PF04084 RecA-like_ORC2 Domain 59 237 5e-51 173.5 Origin recognition complex subunit 2 RecA-like domain
XP_057774331.1 Pfam PF24882 WHD_ORC2 Domain 290 349 3.5e-22 78.5 ORC2 WHD

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA
XM_057918347.1
CTCTCCATTTTCCCTCTCTGCCTCCCTCGCACTCACTGGTTTTTAAAAAATCAAGACATCTCTCTGCCTTGCTCTCGCCGCCTCCCCTCCCTTCCTAAGATCTGGCGTTTCTTCGCCGTCGACCACCACCACGACTACCCTAATCTCTTTCGCACACGACCCCCACCCCTTGCTCTTTCTCACTTCTCTCGGCCGTCCGGCGAGAAATCGCCGTCACCACCGCTGCCCACTTCCTCCGGTCGTGCGTGGTCCCGCCCCGC...
XM_057918342.1
CTCTCCATTTTCCCTCTCTGCCTCCCTCGCACTCACTGGTTTTTAAAAAATCAAGACATCTCTCTGCCTTGCTCTCGCCGCCTCCCCTCCCTTCCTAAGATCTGGCGTTTCTTCGCCGTCGACCACCACCACGACTACCCTAATCTCTTTCGCACACGACCCCCACCCCTTGCTCTTTCTCACTTCTCTCGGCCGTCCGGCGAGAAATCGCCGTCACCACCGCTGCCCACTTCCTCCGGTCGTGCGTGGTCCCGCCCCGC...

CDS

7 records

下载 CDS FASTA
LOC130993450
ATGGATATCTTCAGTCAATCAATCTTAAACAGTATGGAGCCAAATGACCCCGAGGAAGAGGAGTTCGGGTTCTCAAGAAACTACTTTTTAGCAAAAGAATTGTGCAGTTCTGGCAAGAAATCAGTGCGCAAAGTTTCTGATATCAATCTCGTAGACGAGCAGGAATTAAGAGAAGCATATGCTAAACTTGAGTTCAAGCACGAGAAAGAGATCAATGCTCTTGTAGAAAGTTACAAGAAGTTGTATACTGAATGGGTTTT...
LOC130993450
ATGGAGCCAAATGACCCCGAGGAAGAGGAGTTCGGGTTCTCAAGAAACTACTTTTTAGCAAAAGAATTGTGCAGTTCTGGCAAGAAATCAGTGCGCAAAGTTTCTGATATCAATCTCGTAGACGAGCAGGAATTAAGAGAAGCATATGCTAAACTTGAGTTCAAGCACGAGAAAGAGATCAATGCTCTTGTAGAAAGTTACAAGAAGTTGTATACTGAATGGGTTTTTATGTTAAGGTGTGGATTTGGGCTTCTGTTGTA...

Protein

7 records

下载 Protein FASTA
XP_057774325.1
MDIFSQSILNSMEPNDPEEEEFGFSRNYFLAKELCSSGKKSVRKVSDINLVDEQELREAYAKLEFKHEKEINALVESYKKLYTEWVFMLRCGFGLLLYGFGSKKGLIEDFASTALTDYSVVVINGYLQSINLKQVTVTLAELLWERLKTQRKLENHLKNQQPFHTQSTDDLISFLDGPHLEDGESFICVVVNNIDGPCLRDSESQQFLARLAACSHILMVASIDHVNAPLLWNKKMVHTEFNWYWYHVPTYAPYKVEGIF...
XP_057774326.1
MEPNDPEEEEFGFSRNYFLAKELCSSGKKSVRKVSDINLVDEQELREAYAKLEFKHEKEINALVESYKKLYTEWVFMLRCGFGLLLYGFGSKKGLIEDFASTALTDYSVVVINGYLQSINLKQVTVTLAELLWERLKTQRKLENHLKNQQPFHTQSTDDLISFLDGPHLEDGESFICVVVNNIDGPCLRDSESQQFLARLAACSHILMVASIDHVNAPLLWNKKMVHTEFNWYWYHVPTYAPYKVEGIFFPPILAHSGST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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