Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002375`

染色体: Chr07 坐标: 22095238-22097466 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002375`
名称	SmilChr07G002375
描述	scarecrow-like protein 8
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	22095238 - 22097466 / `-`

ID 对照

NCBI Gene ID	`LOC130993456`
GeneID	`130993456`
locus_tag	`-`
NCBI Name	`LOC130993456`
原始查询	`LOC130993456`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	scarecrow-like protein 8
产物	scarecrow-like protein 8
Arabidopsis	`AT5G52510` (SCL8) SCARECROW-like 8 [Source:NCBI gene (formerly Entrezgene);Acc:835327] identity=50.6; qcov=0.817; evalue=1.92e-141; confidence=high
Rice	`Os01g0881500` (SCL1) - identity=42; qcov=0.796; evalue=5.27e-104; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0043565 (sequence-specific DNA binding)
KEGG	-
Pfam	PF03514 (GRAS)
InterPro	-
eggNOG	-
NR	GeneID:130993456

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774339.1`
2	Chromosome	染色体	0.00000	`XP_057774339.1`
3	Centromere	着丝粒	0.00000	`XP_057774339.1`
4	Chromatin	染色质	0.00000	`XP_057774339.1`
5	Telomere	端粒	0.00000	`XP_057774339.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:22095526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,B31
`Chr7:22095534`	`CT`	`C`	1bp_deletion	frameshift_variant	11	A13,B102,B110,B123,B26,B40,B71,C23,C27,C64,C82
`Chr7:22095537`	`G`	`GC`	1bp_insertion	frameshift_variant	16	A13,B102,B110,B123,B135,B26,B3,B4,B40,B71,B75,C23,C27,C64,C82,D1
`Chr7:22095559`	`ATC`	`A`	2bp_deletion	frameshift_variant	25	A13,A25,B102,B110,B112,B114,B122,B123,B135,B26,B3,B4,B40,B48,B54,B58,B71,B75,B95,C23,C27,C5,C64,C82,D1
`Chr7:22095563`	`T`	`TCG`	2bp_insertion	frameshift_variant	25	A13,A25,B102,B110,B112,B114,B122,B123,B135,B26,B3,B4,B40,B48,B54,B58,B71,B75,B95,C23,C27,C5,C64,C82,D1
`Chr7:22095654`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr7:22095677`	`TG`	`T`	1bp_deletion	frameshift_variant	106	A1,A10,A11,A16,A19,A2,A20,A21,A22,A25,A7,A9,B10,B101,B102,B103,B104,B110,B115,B12,B121,B122,B123,B124,B125,B131,B133,B135,B136,B137,B138,B14,B15,B20,B26,B28,B3,B31,B34,B36,B37,B38,B40,B44,B47,B53,B54,B56,B58,B6,B60,B65,B66,B67,B68,B69,B7,B72,B75,B76,B78,B81,B84,B91,B95,B96,B97,B98,B99,C12,C15,C16,C19,C24,C27,C28,C3,C33,C37,C4,C45,C5,C50,C51,C56,C57,C58,C59,C60,C64,C69,C70,C71,C72,C77,C82,C83,C84,C86,C87,D1,D10,D11,D3,D5,D8
`Chr7:22095684`	`CGA`	`C`	2bp_deletion	frameshift_variant	104	A1,A10,A11,A16,A19,A2,A20,A22,A25,A7,A9,B10,B101,B102,B103,B104,B110,B115,B12,B121,B122,B123,B124,B125,B131,B133,B135,B136,B137,B138,B14,B15,B20,B26,B28,B3,B31,B34,B36,B37,B38,B40,B44,B47,B53,B54,B56,B58,B6,B60,B65,B66,B67,B68,B69,B7,B72,B75,B76,B78,B81,B84,B91,B95,B96,B97,B98,B99,C12,C15,C16,C19,C24,C27,C28,C33,C37,C4,C45,C5,C50,C51,C56,C57,C58,C59,C60,C64,C69,C70,C71,C72,C77,C82,C83,C84,C86,C87,D1,D10,D11,D3,D5,D8
`Chr7:22095702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr7:22095767`	`TGC`	`T`	2bp_deletion	frameshift_variant	222	A10,A11,A13,A14,A16,A18,A19,A20,A22,A23,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B107,B108,B109,B11,B110,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B129,B13,B131,B133,B134,B135,B136,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B45,B47,B48,B5,B50,B51,B53,B55,B56,B58,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B70,B71,B72,B73,B74,B75,B78,B79,B8,B80,B82,B83,B84,B85,B86,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,C1,C10,C11,C14,C15,C16,C17,C18,C19,C2,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C7,C71,C72,C73,C74,C75,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D8,D9
`Chr7:22095770`	`C`	`CGT`	2bp_insertion	frameshift_variant	218	A10,A11,A13,A14,A16,A18,A19,A20,A22,A24,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B105,B107,B108,B109,B11,B110,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B129,B13,B131,B133,B134,B135,B136,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B45,B47,B48,B5,B50,B51,B53,B55,B56,B58,B6,B60,B61,B62,B63,B64,B65,B66,B67,B68,B69,B70,B71,B72,B73,B74,B75,B78,B79,B8,B80,B82,B83,B84,B85,B86,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,C1,C10,C11,C14,C15,C16,C17,C18,C19,C2,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C43,C44,C46,C47,C49,C5,C50,C51,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C68,C7,C71,C72,C73,C74,C75,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D8,D9
`Chr7:22095811`	`ATG`	`A`	2bp_deletion	frameshift_variant	243	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B106,B107,B108,B109,B11,B110,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B137,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B21,B22,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B4,B40,B41,B42,B44,B45,B46,B47,B48,B5,B50,B51,B52,B53,B55,B56,B57,B58,B59,B6,B60,B62,B63,B64,B65,B66,B67,B68,B69,B7,B70,B71,B72,B73,B74,B75,B76,B78,B79,B8,B80,B82,B83,B84,B85,B86,B87,B89,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C36,C37,C38,C39,C4,C40,C41,C42,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C70,C72,C73,C74,C75,C77,C78,C79,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774339.1

563 aa

282

563

GRAS

PF03514 GRAS 196-563 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774339.1`	Pfam	`PF03514`	GRAS	Family	196	563	4.4e-106	355.7	GRAS domain family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057918356.1
AGGGAATTCAATTTGAACCCGCCACCGCGTGTACATTCACGTGATGAAAGCGCGCGCGTGAATTGTGTGTGGCCTCTCATCCGAGGAATCCGACCGTCGATTCATCCTCAAAAGAACAAATGAGTCTCCTAATTGGACGGCTTAGATGAGAGACACGTAAAACTCTGTCGTAAAAGCAACAATTTTCAAACTTAGAAATAAACGAAACTCACAACATAGATCACTCACATCCAGTTGGAAACCCCATATTTTTCCCCCAT...

CDS

1 records

下载 CDS FASTA

LOC130993456
ATGTCCTCCGGATTTCCCGGCGGCGGGCGGGACTTCTTCACCGGCGGCGGGGGCAGTTACAGCACCAATCAACAGCAGCAATTTCCGTTCCGATCGCCGCTATCCAGAATTCTTCCGGACCCTGCTTCCCAGATCCGGCGGCCGGATTTGATCAGGAAGAGATCACTAGCAGAATTTCAGCAACAGAACCAGCAAGGTTTGGAGTTGTATCTACGGAACGTGAAGATGAGGCATGTATCCCCCATCTCTCCGGTAGATTT...

Protein

1 records

下载 Protein FASTA

XP_057774339.1
MSSGFPGGGRDFFTGGGGSYSTNQQQQFPFRSPLSRILPDPASQIRRPDLIRKRSLAEFQQQNQQGLELYLRNVKMRHVSPISPVDFPTILPDVSNSRYAQHRLQPLSISNRNTIFSGVNLPGQDTQTKMMNYRLQELEKELLGDEDDGEEVSVVTHSEWSETIQNLIAPTISPSPTSSSSSCSSTSASPPIPSTKQSLMDAAAAISEGNLPTATDIITRLQQVASPRGSSEQRLTAFMVSALKSRVNPTERPHSTSELY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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