Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002384`

染色体: Chr07 坐标: 22229312-22231742 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002384`
名称	SmilChr07G002384
描述	short-chain dehydrogenase TIC 32, chloroplastic-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	22229312 - 22231742 / `-`

ID 对照

NCBI Gene ID	`LOC130993466`
GeneID	`130993466`
locus_tag	`-`
NCBI Name	`LOC130993466`
原始查询	`LOC130993466`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	short-chain dehydrogenase TIC 32, chloroplastic-like
产物	short-chain dehydrogenase TIC 32%2C chloroplastic-like
Arabidopsis	`AT4G23420` (AT4G23420) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828441] identity=64.3; qcov=1; evalue=8.19e-151; confidence=high
Rice	`Os09g0570300` - identity=65; qcov=0.99; evalue=9.15e-154; confidence=high
GO	-
KEGG	-
Pfam	PF00106 (adh_short); PF08659 (KR); PF13561 (adh_short_C2)
InterPro	-
eggNOG	-
NR	GeneID:130993466

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	0.60000	`XP_057774345.1`
2	Mitochondrion	线粒体	0.40000	`XP_057774344.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057774344.1`
4	Lipid droplet	脂滴	0.20000	`XP_057774344.1`
5	Nucleus	细胞核	0.00000	`XP_057774344.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:22229581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,C41,C74
`Chr7:22229622`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	B22
`Chr7:22229622`	`CTT`	`C`	2bp_deletion	CDS_variant	1	B22
`Chr7:22229838`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:22229989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr7:22229994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B137,C41,C74
`Chr7:22230006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B60,B79,C36
`Chr7:22230330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,A9,B72,C4
`Chr7:22230820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B27,B44,B72
`Chr7:22231491`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C13
`Chr7:22231491`	`TG`	`T`	1bp_deletion	CDS_variant	1	C13

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774344.1

321 aa

160

321

adh_short

adh_short_C2

PF08659 KR 31-122 aa PF00106 adh_short 31-177 aa PF13561 adh_short_C2 36-275 aa

XP_057774345.1

314 aa

157

314

adh_short

adh_short_C2

PF08659 KR 31-122 aa PF00106 adh_short 31-177 aa PF13561 adh_short_C2 36-258 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774344.1`	Pfam	`PF08659`	KR	Family	31	122	4e-06	27.6	KR domain
`XP_057774344.1`	Pfam	`PF00106`	adh_short	Domain	31	177	3.5e-31	108.9	short chain dehydrogenase
`XP_057774344.1`	Pfam	`PF13561`	adh_short_C2	Domain	36	275	2.8e-17	63.8	Enoyl-(Acyl carrier protein) reductase
`XP_057774345.1`	Pfam	`PF08659`	KR	Family	31	122	3.8e-06	27.7	KR domain
`XP_057774345.1`	Pfam	`PF00106`	adh_short	Domain	31	177	3.2e-31	109.1	short chain dehydrogenase
`XP_057774345.1`	Pfam	`PF13561`	adh_short_C2	Domain	36	258	1.3e-17	64.9	Enoyl-(Acyl carrier protein) reductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918362.1
ATGTGGACGCCACATATTTGATATCCTTATTCCATGCAAGTGCAACCCCACACAGATATACAATGTTCGGCGTAGCTACGTAAAAAGTAAATGTATTTGTTGATGAAATGTCTGTGTCGGGCCACACTAGGATCTCTGCTACTTCATTTTATTTTTGAAAAAATTACTCCTACAATCTTTCCATTCATTATATATAACTTGGTGACAAGTGCTACTAGAAGAAAAAATATTGTCAAGAGATGTGGCTGTTCAGGGGAAAT...

XM_057918361.1
ATGTGGACGCCACATATTTGATATCCTTATTCCATGCAAGTGCAACCCCACACAGATATACAATGTTCGGCGTAGCTACGTAAAAAGTAAATGTATTTGTTGATGAAATGTCTGTGTCGGGCCACACTAGGATCTCTGCTACTTCATTTTATTTTTGAAAAAATTACTCCTACAATCTTTCCATTCATTATATATAACTTGGTGACAAGTGCTACTAGAAGAAAAAATATTGTCAAGAGATGTGGCTGTTCAGGGGAAAT...

CDS

2 records

下载 CDS FASTA

LOC130993466
ATGTGGCTGTTCAGGGGAAATGGGCCTTCTGGATTTTCTTCAGCTTCCACAGCTGAGGAAGTTACCAAAGGAATTGATGCCTCTGGCCTCACTGCCATTGTTACAGGGGCGTCAAGTGGTATAGGATTAGAAACAACGCGTGTTCTTGCTAAGCGCGGTGTTCATGTTGTGATGGGAATCAGAAATATGGGTGCTGGAGAGAGAGTTAAAGAAGGAATCATCAAAGAGAATCCAGCTGCCAAGATTGATGCCATTGAGTT...

Protein

2 records

下载 Protein FASTA

XP_057774344.1
MWLFRGNGPSGFSSASTAEEVTKGIDASGLTAIVTGASSGIGLETTRVLAKRGVHVVMGIRNMGAGERVKEGIIKENPAAKIDAIELDLSSMKSVRSFASEFTSSGLPLNILINNAGIMMPPFTLSADKIELQFATNYIGHFLLTHLLLDTMKKTARDTKREGRIVNLSSRAHRHSYRQGIRFHKINDEKSYSKWYAYGQSKLANILHANELCRRLKEEGADITANSVHPGVIATNLFRHFGIFEGNLGIFEGLASSVGR...

XP_057774345.1
MWLFRGNGPSGFSSASTAEEVTKGIDASGLTAIVTGASSGIGLETTRVLAKRGVHVVMGIRNMGAGERVKEGIIKENPAAKIDAIELDLSSMKSVRSFASEFTSSGLPLNILINNAGIMMPPFTLSADKIELQFATNYIGHFLLTHLLLDTMKKTARDTKREGRIVNLSSRAHRHSYRQGIRFHKINDEKSYSKWYAYGQSKLANILHANELCRRLKEEGADITANSVHPGVIATNLFRHFGIFEGLASSVGRLVLKNVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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