当前解析结果
SmilChr07G002445| 统一新 Gene ID | SmilChr07G002445 |
|---|---|
| 名称 | SmilChr07G002445 |
| 描述 | uncharacterized SmilChr07G002445 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 22952491 - 22955251 / + |
| NCBI Gene ID | LOC130993526 |
|---|---|
| GeneID | 130993526 |
| locus_tag | - |
| NCBI Name | LOC130993526 |
| 原始查询 | LOC130993526 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0597300; species=rice; confidence=low |
| 产物 | hit=Os12g0597300; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=26; qcov=0.643; evalue=1.22e-56; confidence=low |
| Rice | Os12g0597300- identity=28.9; qcov=0.647; evalue=5.17e-68; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993526 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774435.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057774435.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057774435.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057774435.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057774435.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:22952529 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B19,B30,B77,C33 |
Chr7:22952542 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C38 |
Chr7:22952580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B63,C71 |
Chr7:22952585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr7:22952614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B64,B79,C31,C69 |
Chr7:22952618 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr7:22952684 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B48,C40 |
Chr7:22952699 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B139,B22,C54 |
Chr7:22952714 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B20,C9 |
Chr7:22952767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:22952812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr7:22952817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774435.1PF03108
DBD_Tnp_Mut 307-348 aa
PF10551
MULE 487-581 aa
PF00872
Transposase_mut 504-657 aa
PF04434
SWIM 732-762 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774435.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 307 | 348 | 4.7e-06 | 26.9 | MuDR family transposase |
XP_057774435.1 |
Pfam | PF10551 |
MULE | Domain | 487 | 581 | 1.9e-19 | 70.6 | MULE transposase domain |
XP_057774435.1 |
Pfam | PF00872 |
Transposase_mut | Family | 504 | 657 | 4.1e-10 | 39.8 | Transposase, Mutator family |
XP_057774435.1 |
Pfam | PF04434 |
SWIM | Domain | 732 | 762 | 9e-08 | 32.2 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。