当前解析结果
SmilChr07G002472| 统一新 Gene ID | SmilChr07G002472 |
|---|---|
| 名称 | SmilChr07G002472 |
| 描述 | cleavage and polyadenylation specificity factor subunit 1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 23237326 - 23252423 / - |
| NCBI Gene ID | LOC130993551 |
|---|---|
| GeneID | 130993551 |
| locus_tag | - |
| NCBI Name | LOC130993551 |
| 原始查询 | LOC130993551 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cleavage and polyadenylation specificity factor subunit 1 |
| 产物 | cleavage and polyadenylation specificity factor subunit 1 |
| Arabidopsis | AT5G51660 (CPSF160)cleavage and polyadenylation specificity factor 160 [Source:NCBI gene (formerly Entrezgene);Acc:835240] identity=68.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0252200- identity=56.9; qcov=0.15; evalue=6.85e-74; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006378 (GO:0006378) |
| KEGG | smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03178 (CPSF_A); PF10433 (Beta-prop_RSE1_1st); PF23726 (Beta-prop_RSE1_2nd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993551 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774462.1 |
| 2 | Nucleoplasm | 核质 | 0.40000 | XP_057774463.1 |
| 3 | Chromosome | 染色体 | 0.20000 | XP_057774462.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774462.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774462.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:23237935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:23237966 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C5,D6 |
Chr7:23238131 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr7:23239449 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr7:23239506 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C72,D1 |
Chr7:23240408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B109,B129,B137,B59,C29 |
Chr7:23240676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr7:23241291 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr7:23241739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,B76 |
Chr7:23242099 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,B85,B91 |
Chr7:23243217 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B100,B41,B84,C37,D4 |
Chr7:23244627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,A18,C16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774462.1PF10433
Beta-prop_RSE1_1st 104-440 aa
PF23726
Beta-prop_RSE1_2nd 565-1008 aa
PF03178
CPSF_A 1085-1419 aa
XP_057774463.1PF10433
Beta-prop_RSE1_1st 104-440 aa
PF23726
Beta-prop_RSE1_2nd 565-1008 aa
PF03178
CPSF_A 1085-1416 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774462.1 |
Pfam | PF10433 |
Beta-prop_RSE1_1st | Repeat | 104 | 440 | 1.9e-16 | 60.7 | RSE1/DDB1/CPSF1 first beta-propeller |
XP_057774462.1 |
Pfam | PF23726 |
Beta-prop_RSE1_2nd | Repeat | 565 | 1008 | 6.7e-61 | 207.1 | RSE1/DDB1/CPSF1 second beta-propeller |
XP_057774462.1 |
Pfam | PF03178 |
CPSF_A | Repeat | 1085 | 1419 | 5.6e-85 | 286.2 | CPSF A subunit region |
XP_057774463.1 |
Pfam | PF10433 |
Beta-prop_RSE1_1st | Repeat | 104 | 440 | 1.1e-16 | 61.5 | RSE1/DDB1/CPSF1 first beta-propeller |
XP_057774463.1 |
Pfam | PF23726 |
Beta-prop_RSE1_2nd | Repeat | 565 | 1008 | 2.1e-61 | 208.8 | RSE1/DDB1/CPSF1 second beta-propeller |
XP_057774463.1 |
Pfam | PF03178 |
CPSF_A | Repeat | 1085 | 1416 | 2.7e-85 | 287.3 | CPSF A subunit region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。