Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002483`

染色体: Chr07 坐标: 23483584-23489070 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002483`
名称	SmilChr07G002483
描述	endoglucanase 8-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	23483584 - 23489070 / `-`

ID 对照

NCBI Gene ID	`LOC130993564`
GeneID	`130993564`
locus_tag	`-`
NCBI Name	`LOC130993564`
原始查询	`LOC130993564`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	endoglucanase 8-like
产物	endoglucanase 8-like
Arabidopsis	`AT1G70710` (GH9B1) glycosyl hydrolase 9B1 [Source:NCBI gene (formerly Entrezgene);Acc:843408] identity=57.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os06g0256900` (OsGH9B3) - identity=58.2; qcov=0.982; evalue=0; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00759 (Glyco_hydro_9)
InterPro	-
eggNOG	-
NR	GeneID:130993564

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell wall	细胞壁	0.60000	`XP_057774476.1`
2	Secreted	分泌到胞外	0.60000	`XP_057774476.1`
3	Cell membrane	细胞膜	0.20000	`XP_057774477.1`
4	Nucleus	细胞核	0.00000	`XP_057774476.1`
5	Chromosome	染色体	0.00000	`XP_057774476.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:23484049`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C74
`Chr7:23484049`	`CT`	`C`	1bp_deletion	CDS_variant	1	C74
`Chr7:23484122`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:23484464`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,D7
`Chr7:23484474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C34,C61
`Chr7:23484893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr7:23485748`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C15,C21
`Chr7:23485774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:23485806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B9,C35
`Chr7:23485896`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B76,C8
`Chr7:23485964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B2,B76,C8
`Chr7:23486017`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774476.1

492 aa

246

492

Glyco_hydro_9

PF00759 Glyco_hydro_9 27-483 aa

XP_057774477.1

490 aa

245

490

Glyco_hydro_9

PF00759 Glyco_hydro_9 25-481 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774476.1`	Pfam	`PF00759`	Glyco_hydro_9	Repeat	27	483	5.3e-150	501.2	Glycosyl hydrolase family 9
`XP_057774477.1`	Pfam	`PF00759`	Glyco_hydro_9	Repeat	25	481	3.2e-150	501.9	Glycosyl hydrolase family 9

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057918494.1
AGAATGAAAGTGATAATGATGAGAAAATTAATGTATATGGTGATAGTATTAGTATTAGTGAGTGTGAGTAGTGGAAATGTAATATTGCATGATTATGGGGATGCCCTTGCTAAAACCGTATTATTTTTTGAGGGGCAGAGGTCAGGGAAGCTGCCTGCTACGCAGCGTTTGGCATGGAGAAAGGACTCGGCTCTTCGCGACGGTCTCGATAAGGGTGTAAGTGTCATTTCCTCATTTTATCTCATTTGATTTGATTTTTA...

XM_057918493.1
AAAGTGATAATGATGAGAAAATTAATGTATATGGTGATAGTATTAGTATTAGTGAGTGTGAGTAGTGGAAATGTAATATTGCATGATTATGGGGATGCCCTTGCTAAAACCGTATTATTTTTTGAGGGGCAGAGGTCAGGGAAGCTGCCTGCTACGCAGCGTTTGGCATGGAGAAAGGACTCGGCTCTTCGCGACGGTCTCGATAAGGGTGTGGACTTAACCGGTGGATACTACGACGCCGGCGACAACGTTAAATATAA...

CDS

2 records

下载 CDS FASTA

LOC130993564
ATGATGAGAAAATTAATGTATATGGTGATAGTATTAGTATTAGTGAGTGTGAGTAGTGGAAATGTAATATTGCATGATTATGGGGATGCCCTTGCTAAAACCGTATTATTTTTTGAGGGGCAGAGGTCAGGGAAGCTGCCTGCTACGCAGCGTTTGGCATGGAGAAAGGACTCGGCTCTTCGCGACGGTCTCGATAAGGGTGTGGACTTAACCGGTGGATACTACGACGCCGGCGACAACGTTAAATATAATTTCCCGAT...

LOC130993564
ATGATAAGAAAAATAATGTATGTAGTGATAGTATTAGTGGGTGTGGGTAGTGGAAATGCAATATTGCATGATTACGGGGACGCCTTCTCAAAAAGCATACTATTTTTTGAGGGGCAAAGGTCAGGGAAGCTGCCCGCTACGCAGCGTTTGACATGGAGAAACAACTCGGCTCTTCATGACGGCCACCACCAGGGCGTGGACTTAACCGGTGGATACTACGACGCCGGCGACAACGTTAAATATAATTTCCCGATGGCATT...

Protein

2 records

下载 Protein FASTA

XP_057774476.1
MMRKLMYMVIVLVLVSVSSGNVILHDYGDALAKTVLFFEGQRSGKLPATQRLAWRKDSALRDGLDKGVDLTGGYYDAGDNVKYNFPMAFSTTMMAWGVIEYGKTMGPELVHALEAVRWSTDYFLKATATPGVVYAQVGDPKADHNCWQRPEDIDTPRTVYVVSRNAPGSEVAAEIAAALAAGSLAFRAFGDKVYAKVLLKRASEVFQFADKYRGSYNDSIGEGVCPFYCDYSGYQDELLWGAAWLYIASKKNLYWNYVTQ...

XP_057774477.1
MIRKIMYVVIVLVGVGSGNAILHDYGDAFSKSILFFEGQRSGKLPATQRLTWRNNSALHDGHHQGVDLTGGYYDAGDNVKYNFPMAFSTTMMAWGVIEYGKTMGPELVHALEAVRWSTDYFLKATATPGVVYAQVGDPKADHNCWQRPEDIDTPRTVYVVSRNAPGSEVAAEIAAALAAGSLAFRAFGDKVYAKVLLKRASEVFQFADKYRGSYNDSIGEGVCPFYCDYSGYQDELLWGAAWLYIASKKNLYWNYVTQNM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器