Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002488

染色体: Chr07 坐标: 23553769-23557171 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002488
名称SmilChr07G002488
描述NAC domain-containing protein 7
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向23553769 - 23557171 / +

ID 对照

NCBI Gene IDLOC130993570
GeneID130993570
locus_tag-
NCBI NameLOC130993570
原始查询LOC130993570

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述NAC domain-containing protein 7
产物NAC domain-containing protein 7
ArabidopsisAT1G12260 (NAC007)
NAC 007 [Source:NCBI gene (formerly Entrezgene);Acc:837780]
identity=55; qcov=1.21; evalue=7.53e-140; confidence=high
RiceOs02g0643600 (ONAC052)
-
identity=54.2; qcov=1.12; evalue=3.64e-124; confidence=high
GOGO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription)
KEGG-
PfamPF02365 (NAM)
InterPro-
eggNOG-
NRGeneID:130993570

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057774481.1
2 Chromosome 染色体 0.00000 XP_057774481.1
3 Centromere 着丝粒 0.00000 XP_057774481.1
4 Chromatin 染色质 0.00000 XP_057774481.1
5 Telomere 端粒 0.00000 XP_057774481.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:23555822 AT A 1bp_deletion frameshift_variant 1 C69
Chr7:23555822 AT A 1bp_deletion CDS_variant 1 C69
Chr7:23555825 TC T 1bp_deletion frameshift_variant 1 C69
Chr7:23555825 TC T 1bp_deletion CDS_variant 1 C69
Chr7:23555830 A AC 1bp_insertion frameshift_variant 2 C11,C69
Chr7:23555830 A AC 1bp_insertion CDS_variant 2 C11,C69
Chr7:23555938 A AAT 2bp_insertion stop_gained,frameshift_variant 42 A15,A2,A25,A5,B112,B123,B130,B2,B21,B26,B38,B39,B4,B5,B50,B51,B57,B58,B6,B65,B66,B72,B74,B75,B79,B81,B82,B93,C1,C10,C11,C18,C22,C23,C51,C58,C67,C69,C76,C82,D1,D9
Chr7:23556089 G GTT 2bp_insertion frameshift_variant 2 B69,B7
Chr7:23556089 G GTT 2bp_insertion CDS_variant 2 B69,B7
Chr7:23556181 C T EMS_canonical_SNV CDS_variant 5 B14,C15,C21,C77,C83
Chr7:23556532 T TA 1bp_insertion frameshift_variant 7 A25,B50,B65,B8,C18,C36,C76
Chr7:23556634 C T EMS_canonical_SNV CDS_variant 1 B71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057774481.1
330 aa
N
1
165
330
NAM
C
PF02365 NAM 8-135 aa
XP_057774482.1
330 aa
N
1
165
330
NAM
C
PF02365 NAM 8-135 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057774481.1 Pfam PF02365 NAM Family 8 135 2.8e-49 167.4 No apical meristem (NAM) protein
XP_057774482.1 Pfam PF02365 NAM Family 8 135 2.8e-49 167.4 No apical meristem (NAM) protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057918499.1
AATTCCGCGCCACCTTTTCTCGCGCCCAAAAAATACTTTCCCCACAATTCAGCTGAGTCTTGACAGCGAGAGACAATCAAAATACTACTTAACCTTTCATCATTAGGGCTCCACTCTCTCTCTCTCTCTACAAATTCCATTTCTCATCTTCCACATATATAACTCCCATTTGGCGTTCCCATTCTCCCCTTGCTCAGTTCTCTCTCTTCCTCGGGATCAGCCCCGACACCTGCGAGACATTGCGTGCAGTTATCACTGTG...
XM_057918498.1
CATTAGGGCTCCACTCTCTCTCTCTCTCTACAAATTCCATTTCTCATCTTCCACATATATAACTCCCATTTGGCGTTCCCATTCTCCCCTTGCTCAGTTCTCTCTCTTCCTCGGGATCAGCCCCGACACCTGCGAGACATTGCGTGCAGTTATCACTGTGTGTGTCAAGGGCTGGGTTTTACTCCCGAGGACTCGCTACCTTCTGCTGCTTCAATTCTATTCATTGGAGCTCATCTTCCCCCACAACTTTTTTCACTTTG...

CDS

2 records

下载 CDS FASTA
LOC130993570
ATGAATACGTTTTCACACGTTCCTCCGGGCTTCCGTTTCCACCCGACGGACGAAGAACTGGTGGATTATTATCTCCGGAGGAAGATTAGTAACAGGAGTATCGACTTGGACGTCATCAAAGACGTTGATCTCTACAAAATTGAGCCATGGGATCTCCAAGAGTTATGCAGAATAGGAACAGAAGATCAAAACGAATGGTACTTTTTCAGCCACAAAGACAAGAAGTACCCAACCGGAACACGCACGAATCGAGCGACGGC...
LOC130993570
ATGAATACGTTTTCACACGTTCCTCCGGGCTTCCGTTTCCACCCGACGGACGAAGAACTGGTGGATTATTATCTCCGGAGGAAGATTAGTAACAGGAGTATCGACTTGGACGTCATCAAAGACGTTGATCTCTACAAAATTGAGCCATGGGATCTCCAAGAGTTATGCAGAATAGGAACAGAAGATCAAAACGAATGGTACTTTTTCAGCCACAAAGACAAGAAGTACCCAACCGGAACACGCACGAATCGAGCGACGGC...

Protein

2 records

下载 Protein FASTA
XP_057774481.1
MNTFSHVPPGFRFHPTDEELVDYYLRRKISNRSIDLDVIKDVDLYKIEPWDLQELCRIGTEDQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRIATTQKLSEHDSPVWYDEHVSFMPDMESPKHHSYNPNHNHLSYSNYPYKKEMPLQYAVPADHFLQLPLLESPKVVQQQQQAMSCRGLSFSNNHDHQQHLDQNF...
XP_057774482.1
MNTFSHVPPGFRFHPTDEELVDYYLRRKISNRSIDLDVIKDVDLYKIEPWDLQELCRIGTEDQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRIATTQKLSEHDSPVWYDEHVSFMPDMESPKHHSYNPNHNHLSYSNYPYKKEMPLQYAVPADHFLQLPLLESPKVVQQQQQAMSCRGLSFSNNHDHQQHLDQNF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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