当前解析结果
SmilChr07G002509| 统一新 Gene ID | SmilChr07G002509 |
|---|---|
| 名称 | SmilChr07G002509 |
| 描述 | F-box protein At1g70590-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 23791337 - 23793773 / - |
| NCBI Gene ID | LOC130993587 |
|---|---|
| GeneID | 130993587 |
| locus_tag | - |
| NCBI Name | LOC130993587 |
| 原始查询 | LOC130993587 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box protein At1g70590-like |
| 产物 | F-box protein At1g70590-like |
| Arabidopsis | AT1G70590 (AT1G70590)F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:843396] identity=60.3; qcov=0.834; evalue=5.16e-126; confidence=high |
| Rice | Os04g0476000 (Os_F0756)- identity=47.9; qcov=0.846; evalue=2.18e-77; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF08238 (Sel1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993587 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057774506.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057774506.1 |
| 3 | Mitochondrion | 线粒体 | 0.40000 | XP_057774506.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057774506.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774506.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:23791719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:23791727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C12 |
Chr7:23791807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C73,D3 |
Chr7:23793108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr7:23793196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C73,D3 |
Chr7:23793198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C48,D10 |
Chr7:23793323 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C24 |
Chr7:23793323 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C24 |
Chr7:23793379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B37,B59 |
Chr7:23793388 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C41 |
Chr7:23793388 |
GC |
G |
1bp_deletion | CDS_variant | 1 | C41 |
Chr7:23793420 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774506.1PF00646
F-box 59-94 aa
PF08238
Sel1 102-135 aa
PF08238
Sel1 153-167 aa
PF08238
Sel1 169-201 aa
PF08238
Sel1 202-237 aa
PF08238
Sel1 238-273 aa
PF08238
Sel1 278-304 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774506.1 |
Pfam | PF00646 |
F-box | Domain | 59 | 94 | 9.6e-05 | 22.9 | F-box domain |
XP_057774506.1 |
Pfam | PF08238 |
Sel1 | Repeat | 102 | 135 | 5.4e-26 | 90.8 | Sel1 repeat |
XP_057774506.1 |
Pfam | PF08238 |
Sel1 | Repeat | 153 | 167 | 5.4e-26 | 90.8 | Sel1 repeat |
XP_057774506.1 |
Pfam | PF08238 |
Sel1 | Repeat | 169 | 201 | 5.4e-26 | 90.8 | Sel1 repeat |
XP_057774506.1 |
Pfam | PF08238 |
Sel1 | Repeat | 202 | 237 | 5.4e-26 | 90.8 | Sel1 repeat |
XP_057774506.1 |
Pfam | PF08238 |
Sel1 | Repeat | 238 | 273 | 5.4e-26 | 90.8 | Sel1 repeat |
XP_057774506.1 |
Pfam | PF08238 |
Sel1 | Repeat | 278 | 304 | 5.4e-26 | 90.8 | Sel1 repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。