Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002524

染色体: Chr07 坐标: 23924054-23927100 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002524
名称SmilChr07G002524
描述uncharacterized SmilChr07G002524
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向23924054 - 23927100 / -

ID 对照

NCBI Gene IDLOC130993599
GeneID130993599
locus_tag-
NCBI NameLOC130993599
原始查询LOC130993599

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843387]; symbol=AT1G70505; hit=AT1G70505; species=arabidopsis; confidence=high
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843387]; symbol=AT1G70505; hit=AT1G70505; species=arabidopsis; confidence=high
ArabidopsisAT1G70505 (AT1G70505)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843387]
identity=47.7; qcov=0.984; evalue=1.38e-97; confidence=high
RiceOs02g0130600
-
identity=42.1; qcov=0.994; evalue=5.47e-85; confidence=medium
GOGO:0016020 (membrane)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130993599

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057774516.1
2 Endosome 内体 0.40000 XP_057774516.1
3 Endoplasmic reticulum 内质网 0.20000 XP_057774517.1
4 Endosome membrane 内体膜 0.20000 XP_057774518.1
5 Nucleus 细胞核 0.00000 XP_057774518.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:23925085 C T EMS_canonical_SNV CDS_variant 1 D3
Chr7:23925557 C T EMS_canonical_SNV CDS_variant 2 C15,C21
Chr7:23925580 C T EMS_canonical_SNV CDS_variant 1 B67
Chr7:23925665 C T EMS_canonical_SNV CDS_variant 1 B105
Chr7:23926258 C T EMS_canonical_SNV CDS_variant 2 B10,C46
Chr7:23926341 C T EMS_canonical_SNV CDS_variant 1 B28
Chr7:23926351 C T EMS_canonical_SNV CDS_variant 1 B28
Chr7:23926386 G A EMS_canonical_SNV CDS_variant 1 B81
Chr7:23926740 T TA 1bp_insertion frameshift_variant 4 B122,B91,C66,C74
Chr7:23926740 T TA 1bp_insertion CDS_variant 4 B122,B91,C66,C74
Chr7:23926778 C T EMS_canonical_SNV CDS_variant 4 B44,B85,C11,C54

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057918536.1
TAGATAAATGGATGGCCACAATTAATTACATATTCTCTGCTCGATCTTCTTTCTATTTTCTTATCGAGGGAGTCTTTGGTTCAGATAATGGAAAAACAATCGCTGCAGTACAATGCTCAACACTCAATCAATCTCCGGATTTACCCAAAAGAAAAGGGAAATATGGGTTGTGGTAGCCATGGTGTTAGCTGCATTTCTAATATGGAGACATGAAGGGCGTAGGGAAGATGAGCATGAGGCAGCAGGGTGCTTGTATGGCG...
XM_057918534.1
TAGATAAATGGATGGCCACAATTAATTACATATTCTCTGCTCGATCTTCTTTCTATTTTCTTATCGAGGGAGTCTTTGGTTCAGATAATGGAAAAACAATCGCTGCAGTACAATGCTCAACACTCAATCAATCTCCGGATTTACCCAAAAGAAAAGGGAAATTATAGCTGATGATACAACAACTCCGAGTTATTGGTTGAATTGGAGATTCTTGGTGTGTGCAGTATGGGTTGTGGTAGCCATGGTGTTAGCTGCATTTC...

CDS

4 records

下载 CDS FASTA
LOC130993599
ATGCTCAACACTCAATCAATCTCCGGATTTACCCAAAAGAAAAGGGAAATATGGGTTGTGGTAGCCATGGTGTTAGCTGCATTTCTAATATGGAGACATGAAGGGCGTAGGGAAGATGAGCATGAGGCAGCAGGGTGCTTGTATGGCGATGAAGTCTGGGGGACGTGCTCGAAATCAATCCATCCCAGTTGGTTGCTTGCTTATAGACTACTTGCTTTCTCTGCCATGCTTGCGCTGCTTCTAGCTAATCTAATCACCAG...
LOC130993599
ATGCTCAACACTCAATCAATCTCCGGATTTACCCAAAAGAAAAGGGAAATTATAGCTGATGATACAACAACTCCGAGTTATTGGTTGAATTGGAGATTCTTGGTGTGTGCAGTATGGGTTGTGGTAGCCATGGTGTTAGCTGCATTTCTAATATGGAGACATGAAGGGCGTAGGGAAGATGAGCATGAGGCAGCAGGGTGCTTGTATGGCGATGAAGTCTGGGGGACGTGCTCGAAATCAATCCATCCCAGTTGGTTGCT...

Protein

4 records

下载 Protein FASTA
XP_057774516.1
MDLSWSSNFDFHFLVYFLCTFLHDVIADDTTTPSYWLNWRFLVCAVWVVVAMVLAAFLIWRHEGRREDEHEAAGCLYGDEVWGTCSKSIHPSWLLAYRLLAFSAMLALLLANLITSGSVKYYFYTEWTFTLVTFYFGLGSSLSIHGSLHCRHEVEQDMDSYISASAEHGSYVPPQLGEHEDMPSQTRSSNCRDEPNCRTAASILGYILQIVFQMSAGAVMLTDSVFWLVLYPSLIARGYRLSFLIVCKHSVNAIFLLGDA...
XP_057774517.1
MLNTQSISGFTQKKREIIADDTTTPSYWLNWRFLVCAVWVVVAMVLAAFLIWRHEGRREDEHEAAGCLYGDEVWGTCSKSIHPSWLLAYRLLAFSAMLALLLANLITSGSVKYYFYTEWTFTLVTFYFGLGSSLSIHGSLHCRHEVEQDMDSYISASAEHGSYVPPQLGEHEDMPSQTRSSNCRDEPNCRTAASILGYILQIVFQMSAGAVMLTDSVFWLVLYPSLIARGYRLSFLIVCKHSVNAIFLLGDAILNRLRFP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器