当前解析结果
SmilChr07G002559| 统一新 Gene ID | SmilChr07G002559 |
|---|---|
| 名称 | SmilChr07G002559 |
| 描述 | cysteine-rich receptor-like protein kinase 2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 24341343 - 24344380 / - |
| NCBI Gene ID | LOC130993630 |
|---|---|
| GeneID | 130993630 |
| locus_tag | - |
| NCBI Name | LOC130993630 |
| 原始查询 | LOC130993630 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine-rich receptor-like protein kinase 2 |
| 产物 | cysteine-rich receptor-like protein kinase 2 |
| Arabidopsis | AT1G70520 (CRK2)cysteine-rich RLK (RECEPTOR-like protein kinase) 2 [Source:NCBI gene (formerly Entrezgene);Acc:843389] identity=67.5; qcov=0.942; evalue=0; confidence=high |
| Rice | Os05g0130100- identity=49.5; qcov=0.776; evalue=3.03e-153; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993630 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057774571.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057774571.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057774571.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057774571.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057774571.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:24341683 |
G |
GA |
1bp_insertion | frameshift_variant | 4 | A21,B115,B124,B20 |
Chr7:24341683 |
G |
GA |
1bp_insertion | CDS_variant | 4 | A21,B115,B124,B20 |
Chr7:24341753 |
A |
ATC |
2bp_insertion | frameshift_variant | 1 | B21 |
Chr7:24341753 |
A |
ATC |
2bp_insertion | CDS_variant | 1 | B21 |
Chr7:24341827 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
Chr7:24342093 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B106 |
Chr7:24342093 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B106 |
Chr7:24342698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:24342728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr7:24342884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr7:24343114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:24343143 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774571.1PF01657
Stress-antifung 64-156 aa
PF01657
Stress-antifung 171-259 aa
PF00069
Pkinase 343-550 aa
PF07714
PK_Tyr_Ser-Thr 346-610 aa
PF17667
Pkinase_fungal 420-530 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774571.1 |
Pfam | PF01657 |
Stress-antifung | Family | 64 | 156 | 2.4e-23 | 83.4 | Salt stress response/antifungal |
XP_057774571.1 |
Pfam | PF01657 |
Stress-antifung | Family | 171 | 259 | 2.4e-23 | 83.4 | Salt stress response/antifungal |
XP_057774571.1 |
Pfam | PF00069 |
Pkinase | Domain | 343 | 550 | 5.7e-47 | 161.0 | Protein kinase domain |
XP_057774571.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 346 | 610 | 3.8e-48 | 164.8 | Protein tyrosine and serine/threonine kinase |
XP_057774571.1 |
Pfam | PF17667 |
Pkinase_fungal | Domain | 420 | 530 | 1.4e-05 | 24.8 | Fungal protein kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。