Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G002559

染色体: Chr07 坐标: 24341343-24344380 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G002559
名称SmilChr07G002559
描述cysteine-rich receptor-like protein kinase 2
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向24341343 - 24344380 / -

ID 对照

NCBI Gene IDLOC130993630
GeneID130993630
locus_tag-
NCBI NameLOC130993630
原始查询LOC130993630

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cysteine-rich receptor-like protein kinase 2
产物cysteine-rich receptor-like protein kinase 2
ArabidopsisAT1G70520 (CRK2)
cysteine-rich RLK (RECEPTOR-like protein kinase) 2 [Source:NCBI gene (formerly Entrezgene);Acc:843389]
identity=67.5; qcov=0.942; evalue=0; confidence=high
RiceOs05g0130100
-
identity=49.5; qcov=0.776; evalue=3.03e-153; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG-
PfamPF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr); PF17667 (Pkinase_fungal)
InterPro-
eggNOG-
NRGeneID:130993630

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057774571.1
2 Nucleus 细胞核 0.00000 XP_057774571.1
3 Chromosome 染色体 0.00000 XP_057774571.1
4 Centromere 着丝粒 0.00000 XP_057774571.1
5 Chromatin 染色质 0.00000 XP_057774571.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:24341683 G GA 1bp_insertion frameshift_variant 4 A21,B115,B124,B20
Chr7:24341683 G GA 1bp_insertion CDS_variant 4 A21,B115,B124,B20
Chr7:24341753 A ATC 2bp_insertion frameshift_variant 1 B21
Chr7:24341753 A ATC 2bp_insertion CDS_variant 1 B21
Chr7:24341827 C T EMS_canonical_SNV CDS_variant 1 C46
Chr7:24342093 TA T 1bp_deletion frameshift_variant 1 B106
Chr7:24342093 TA T 1bp_deletion CDS_variant 1 B106
Chr7:24342698 G A EMS_canonical_SNV CDS_variant 1 D10
Chr7:24342728 C T EMS_canonical_SNV CDS_variant 1 B72
Chr7:24342884 C T EMS_canonical_SNV CDS_variant 1 B84
Chr7:24343114 C T EMS_canonical_SNV CDS_variant 1 B104
Chr7:24343143 C T EMS_canonical_SNV CDS_variant 1 B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057774571.1
656 aa
N
1
328
656
Stress-antifung
Stress-antifung
Pkinase
PK_Tyr_Ser-Thr
Pkinase_fungal
C
PF01657 Stress-antifung 64-156 aa PF01657 Stress-antifung 171-259 aa PF00069 Pkinase 343-550 aa PF07714 PK_Tyr_Ser-Thr 346-610 aa PF17667 Pkinase_fungal 420-530 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057774571.1 Pfam PF01657 Stress-antifung Family 64 156 2.4e-23 83.4 Salt stress response/antifungal
XP_057774571.1 Pfam PF01657 Stress-antifung Family 171 259 2.4e-23 83.4 Salt stress response/antifungal
XP_057774571.1 Pfam PF00069 Pkinase Domain 343 550 5.7e-47 161.0 Protein kinase domain
XP_057774571.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 346 610 3.8e-48 164.8 Protein tyrosine and serine/threonine kinase
XP_057774571.1 Pfam PF17667 Pkinase_fungal Domain 420 530 1.4e-05 24.8 Fungal protein kinase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057918588.1
GTCATTCAGAATCATCCAAATAAAAAATCTGTAATGAAATTTGAAGTTGATTATTTCTCTCACGCCCAAAAAGGATCATTTAATGACTACTTCGGTGTTAAGATAAAGTAGTATTATCTGCTCATCTTTGATATTAAATCACTAAATCCAGAGATTCAAATGTGGGTTGAATTTGGTCTTCACCGGGAAGTAATTAGTAATCGGTTTGTGGTTGGAGCGATGTGAAAGGCTGGTGCTGTGTGTAATTGTAAATGGGGCCA...

CDS

1 records

下载 CDS FASTA
LOC130993630
ATGCGTGTCGTGTTACCGTATCGAGTGTCGCCACCTCCCACAAATTTAAACTGCGTGAAAACTTTTAGTTTGGTGGGCATTGAAAACCAAAGAGCGACGATGTTTGCAGAAGCAATGGCGACGATGGTGACAGCCTCAATCCTGCTATTTGGAGAGGCAGCGCCGAGATCCGAGACGGTGAAGCTGACGTGCGGGAAGCACGCGGAGCACAACGCCACTCTCTACGTGCCCAACTTCGTGGCCACCATGGAGAACATAAG...

Protein

1 records

下载 Protein FASTA
XP_057774571.1
MRVVLPYRVSPPPTNLNCVKTFSLVGIENQRATMFAEAMATMVTASILLFGEAAPRSETVKLTCGKHAEHNATLYVPNFVATMENISAQMRSSGFGQAITGSGPDTNYGLAQCYGDLSLLDCVLCYAEARTLLPQCFPANGGRIFLDGCFMRAENYPFFHEHAAPDDRAVCGNTTRKDPAFRAAARQAVSEAVSAAANGDGYGRAARDQSAYVLANCWRTLDAGSCRACLENASRSVLGCLPSSDGRALNTGCFLRYSHT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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