当前解析结果
SmilChr07G002560| 统一新 Gene ID | SmilChr07G002560 |
|---|---|
| 名称 | SmilChr07G002560 |
| 描述 | cysteine-rich receptor-like protein kinase 3 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 24344487 - 24347182 / - |
| NCBI Gene ID | LOC130993631 |
|---|---|
| GeneID | 130993631 |
| locus_tag | - |
| NCBI Name | LOC130993631 |
| 原始查询 | LOC130993631 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine-rich receptor-like protein kinase 3 |
| 产物 | cysteine-rich receptor-like protein kinase 3 |
| Arabidopsis | AT1G70530 (CRK3)cysteine-rich RLK (RECEPTOR-like protein kinase) 3 [Source:NCBI gene (formerly Entrezgene);Acc:843390] identity=66.7; qcov=0.978; evalue=7.03e-167; confidence=high |
| Rice | Os05g0130100- identity=62.2; qcov=0.622; evalue=8.08e-98; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF01657 (Stress-antifung); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993631 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057774572.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057774575.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774572.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774572.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774572.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:24344690 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,B139 |
Chr7:24344698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B132,C28,C79 |
Chr7:24346049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr7:24346450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B120,B121,B18,B48,C50 |
Chr7:24346545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B115,B2,B53,C44,C8 |
Chr7:24346684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr7:24346976 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B66,C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774572.1PF01657
Stress-antifung 32-130 aa
PF01657
Stress-antifung 152-238 aa
PF00069
Pkinase 324-588 aa
PF07714
PK_Tyr_Ser-Thr 326-591 aa
XP_057774573.1PF01657
Stress-antifung 32-130 aa
PF01657
Stress-antifung 152-238 aa
PF00069
Pkinase 324-589 aa
PF07714
PK_Tyr_Ser-Thr 326-592 aa
XP_057774574.1PF01657
Stress-antifung 32-130 aa
PF01657
Stress-antifung 152-238 aa
PF00069
Pkinase 324-483 aa
PF07714
PK_Tyr_Ser-Thr 326-475 aa
XP_057774575.1PF00069
Pkinase 46-311 aa
PF07714
PK_Tyr_Ser-Thr 48-314 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774572.1 |
Pfam | PF01657 |
Stress-antifung | Family | 32 | 130 | 3.4e-28 | 98.9 | Salt stress response/antifungal |
XP_057774572.1 |
Pfam | PF01657 |
Stress-antifung | Family | 152 | 238 | 3.4e-28 | 98.9 | Salt stress response/antifungal |
XP_057774572.1 |
Pfam | PF00069 |
Pkinase | Domain | 324 | 588 | 1.2e-45 | 156.8 | Protein kinase domain |
XP_057774572.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 326 | 591 | 2.1e-45 | 155.8 | Protein tyrosine and serine/threonine kinase |
XP_057774573.1 |
Pfam | PF01657 |
Stress-antifung | Family | 32 | 130 | 3.4e-28 | 98.9 | Salt stress response/antifungal |
XP_057774573.1 |
Pfam | PF01657 |
Stress-antifung | Family | 152 | 238 | 3.4e-28 | 98.9 | Salt stress response/antifungal |
XP_057774573.1 |
Pfam | PF00069 |
Pkinase | Domain | 324 | 589 | 1.7e-45 | 156.2 | Protein kinase domain |
XP_057774573.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 326 | 592 | 6.2e-45 | 154.2 | Protein tyrosine and serine/threonine kinase |
XP_057774574.1 |
Pfam | PF01657 |
Stress-antifung | Family | 32 | 130 | 1.9e-28 | 99.7 | Salt stress response/antifungal |
XP_057774574.1 |
Pfam | PF01657 |
Stress-antifung | Family | 152 | 238 | 1.9e-28 | 99.7 | Salt stress response/antifungal |
XP_057774574.1 |
Pfam | PF00069 |
Pkinase | Domain | 324 | 483 | 3.8e-31 | 109.2 | Protein kinase domain |
XP_057774574.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 326 | 475 | 5.3e-30 | 105.3 | Protein tyrosine and serine/threonine kinase |
XP_057774575.1 |
Pfam | PF00069 |
Pkinase | Domain | 46 | 311 | 4e-46 | 158.3 | Protein kinase domain |
XP_057774575.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 48 | 314 | 1.4e-45 | 156.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。