Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002564`

染色体: Chr07 坐标: 24445777-24457780 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002564`
名称	SmilChr07G002564
描述	alpha-glucan water dikinase, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	24445777 - 24457780 / `+`

ID 对照

NCBI Gene ID	`LOC130993633`
GeneID	`130993633`
locus_tag	`-`
NCBI Name	`LOC130993633`
原始查询	`LOC130993633`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha-glucan water dikinase, chloroplastic
产物	alpha-glucan water dikinase%2C chloroplastic
Arabidopsis	`AT1G10760` (SEX1) Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:837619] identity=61.4; qcov=1.02; evalue=0; confidence=high
Rice	`Os06g0498400` - identity=66.4; qcov=0.969; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016301 (kinase activity); GO:0016310 (phosphorylation)
KEGG	-
Pfam	PF01326 (PPDK_N); PF22973 (GWD1_pHisD); PF23166 (Ig_N_CWD1); PF23229 (DUF7067)
InterPro	-
eggNOG	-
NR	GeneID:130993633

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057774577.1`
2	Chloroplast membrane	叶绿体膜	0.60000	`XP_057774577.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057774579.1`
4	Nucleus	细胞核	0.00000	`XP_057774577.1`
5	Chromosome	染色体	0.00000	`XP_057774577.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:24446533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:24446540`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr7:24446606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B75,C67
`Chr7:24447622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B136,B81
`Chr7:24448729`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr7:24449011`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr7:24449119`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B115,B124
`Chr7:24449399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr7:24449400`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr7:24451142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr7:24453132`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,C67
`Chr7:24453409`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C15,C21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774577.1

1473 aa

736

1473

Ig_N_CWD1

DUF7067

Ig_N_CWD1

GWD1_pHisD

PPDK_N

PF23166 Ig_N_CWD1 94-211 aa PF23229 DUF7067 225-279 aa PF23229 DUF7067 305-360 aa PF23166 Ig_N_CWD1 431-550 aa PF22973 GWD1_pHisD 1016-1128 aa PF01326 PPDK_N 1271-1472 aa

XP_057774578.1

1473 aa

736

1473

Ig_N_CWD1

DUF7067

Ig_N_CWD1

GWD1_pHisD

PPDK_N

PF23166 Ig_N_CWD1 94-211 aa PF23229 DUF7067 225-279 aa PF23229 DUF7067 305-360 aa PF23166 Ig_N_CWD1 431-550 aa PF22973 GWD1_pHisD 1016-1128 aa PF01326 PPDK_N 1271-1472 aa

XP_057774579.1

1472 aa

736

1472

Ig_N_CWD1

DUF7067

Ig_N_CWD1

GWD1_pHisD

PPDK_N

PF23166 Ig_N_CWD1 93-210 aa PF23229 DUF7067 224-278 aa PF23229 DUF7067 304-359 aa PF23166 Ig_N_CWD1 430-549 aa PF22973 GWD1_pHisD 1015-1127 aa PF01326 PPDK_N 1270-1471 aa

XP_057774580.1

1472 aa

736

1472

Ig_N_CWD1

DUF7067

Ig_N_CWD1

GWD1_pHisD

PPDK_N

PF23166 Ig_N_CWD1 93-210 aa PF23229 DUF7067 224-278 aa PF23229 DUF7067 304-359 aa PF23166 Ig_N_CWD1 430-549 aa PF22973 GWD1_pHisD 1015-1127 aa PF01326 PPDK_N 1270-1471 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774577.1`	Pfam	`PF23166`	Ig_N_CWD1	Domain	94	211	5.2e-68	227.5	Alpha-glucan water dikinase 1 Ig-like N-terminal domain
`XP_057774577.1`	Pfam	`PF23229`	DUF7067	Domain	225	279	1.6e-55	185.4	Alpha-glucan water dikinase, DUF7067
`XP_057774577.1`	Pfam	`PF23229`	DUF7067	Domain	305	360	1.6e-55	185.4	Alpha-glucan water dikinase, DUF7067
`XP_057774577.1`	Pfam	`PF23166`	Ig_N_CWD1	Domain	431	550	5.2e-68	227.5	Alpha-glucan water dikinase 1 Ig-like N-terminal domain
`XP_057774577.1`	Pfam	`PF22973`	GWD1_pHisD	Domain	1016	1128	5.6e-53	178.2	Alpha-glucan water dikinase, phosphohistidine-like domain
`XP_057774577.1`	Pfam	`PF01326`	PPDK_N	Family	1271	1472	7e-25	88.7	Pyruvate phosphate dikinase, AMP/ATP-binding domain
`XP_057774578.1`	Pfam	`PF23166`	Ig_N_CWD1	Domain	94	211	5.2e-68	227.5	Alpha-glucan water dikinase 1 Ig-like N-terminal domain
`XP_057774578.1`	Pfam	`PF23229`	DUF7067	Domain	225	279	1.6e-55	185.4	Alpha-glucan water dikinase, DUF7067
`XP_057774578.1`	Pfam	`PF23229`	DUF7067	Domain	305	360	1.6e-55	185.4	Alpha-glucan water dikinase, DUF7067
`XP_057774578.1`	Pfam	`PF23166`	Ig_N_CWD1	Domain	431	550	5.2e-68	227.5	Alpha-glucan water dikinase 1 Ig-like N-terminal domain
`XP_057774578.1`	Pfam	`PF22973`	GWD1_pHisD	Domain	1016	1128	5.6e-53	178.2	Alpha-glucan water dikinase, phosphohistidine-like domain
`XP_057774578.1`	Pfam	`PF01326`	PPDK_N	Family	1271	1472	7e-25	88.7	Pyruvate phosphate dikinase, AMP/ATP-binding domain
`XP_057774579.1`	Pfam	`PF23166`	Ig_N_CWD1	Domain	93	210	5.2e-68	227.5	Alpha-glucan water dikinase 1 Ig-like N-terminal domain
`XP_057774579.1`	Pfam	`PF23229`	DUF7067	Domain	224	278	1.6e-55	185.4	Alpha-glucan water dikinase, DUF7067
`XP_057774579.1`	Pfam	`PF23229`	DUF7067	Domain	304	359	1.6e-55	185.4	Alpha-glucan water dikinase, DUF7067
`XP_057774579.1`	Pfam	`PF23166`	Ig_N_CWD1	Domain	430	549	5.2e-68	227.5	Alpha-glucan water dikinase 1 Ig-like N-terminal domain
`XP_057774579.1`	Pfam	`PF22973`	GWD1_pHisD	Domain	1015	1127	5.6e-53	178.2	Alpha-glucan water dikinase, phosphohistidine-like domain
`XP_057774579.1`	Pfam	`PF01326`	PPDK_N	Family	1270	1471	7e-25	88.7	Pyruvate phosphate dikinase, AMP/ATP-binding domain
`XP_057774580.1`	Pfam	`PF23166`	Ig_N_CWD1	Domain	93	210	5.2e-68	227.5	Alpha-glucan water dikinase 1 Ig-like N-terminal domain
`XP_057774580.1`	Pfam	`PF23229`	DUF7067	Domain	224	278	1.6e-55	185.4	Alpha-glucan water dikinase, DUF7067
`XP_057774580.1`	Pfam	`PF23229`	DUF7067	Domain	304	359	1.6e-55	185.4	Alpha-glucan water dikinase, DUF7067
`XP_057774580.1`	Pfam	`PF23166`	Ig_N_CWD1	Domain	430	549	5.2e-68	227.5	Alpha-glucan water dikinase 1 Ig-like N-terminal domain
`XP_057774580.1`	Pfam	`PF22973`	GWD1_pHisD	Domain	1015	1127	5.6e-53	178.2	Alpha-glucan water dikinase, phosphohistidine-like domain
`XP_057774580.1`	Pfam	`PF01326`	PPDK_N	Family	1270	1471	7e-25	88.7	Pyruvate phosphate dikinase, AMP/ATP-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057918597.1
CCGTTCCCTCATGATAATAATATCAGCAGTAACGTATTAACACCGTTCTTTCTTTCTTTCTAAATAAATCTTTCCACTTTCCATCATCGCTTCACTCTCTTCGAGCTTCCAACTTCTCTTAGATTGCATTCTGTCCACATTTTTTGTCCGAATTTGCTTATGCTTCAGCATAAATATTGAGGTCGAAGTTGTGAATTTTGGAGTTAATCATACAATTGAGAAAACATGAGCAACACGATTGGGAATAACTTGCTGCATCA...

XM_057918594.1
ACGTATTAACACCGTTCTTTCTTTCTTTCTAAATAAATCTTTCCACTTTCCATCATCGCTTCACTCTCTTCGAGCTTCCAACTTCTCTTAGATTGCATTCTGTCCACATTTTTTGTCCGAATTTGCTTATGCTTCAGTTCCTTCTTTGACAGCATAAATATTGAGGTCGAAGTTGTGAATTTTGGAGTTAATCATACAATTGAGAAAACATGAGCAACACGATTGGGAATAACTTGCTGCATCAGAGTTTGCTTTCTCCG...

CDS

4 records

下载 CDS FASTA

LOC130993633
ATGAGCAACACGATTGGGAATAACTTGCTGCATCAGAGTTTGCTTTCTCCGACAGTTTTAGAGCATCAGAGTCGAAGCAATACTTCAACCTCAATTTGGGGGAATACCTTTCTCCAGCATCAAGCAAATTCACTGACACACCGAGCTCCTATATCTACTGAGTTCCGGGGTAGAAGGCTTACACTGCAGAAAAATAAATTACAGATGGGAAAGATGTATACTATTTTGAGATCCACGAAGGCTGTCTTGGCTGCTGATCC...

Protein

4 records

下载 Protein FASTA

XP_057774577.1
MSNTIGNNLLHQSLLSPTVLEHQSRSNTSTSIWGNTFLQHQANSLTHRAPISTEFRGRRLTLQKNKLQMGKMYTILRSTKAVLAADPSSVQQMEKFRLDEKVELQVDVGLPTSGSASVVNIQVTSSSDSLLLHWGAIKKQQDKWSLPQSRPVGTMVYKNRALRSPFVKSGANAALSIEIDDPAIEALEFLIYDEAQNKWYKYNGGNFHVNLPKTEFTIPNISVPEDLVQIQAYLRWERKGKQMYTPEQEKEEYEAARMEL...

XP_057774578.1
MSNTIGNNLLHQSLLSPTVLEHQSRSNTSTSIWGNTFLQHQANSLTHRAPISTEFRGRRLTLQKNKLQMGKMYTILRSTKAVLAADPSSVQQMEKFRLDEKVELQVDVGLPTSGSASVVNIQVTSSSDSLLLHWGAIKKQQDKWSLPQSRPVGTMVYKNRALRSPFVKSGANAALSIEIDDPAIEALEFLIYDEAQNKWYKYNGGNFHVNLPKTEFTIPNISVPEDLVQIQAYLRWERKGKQMYTPEQEKEEYEAARMEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器