Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002575`

染色体: Chr07 坐标: 24580313-24594286 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002575`
名称	SmilChr07G002575
描述	methyl-CpG-binding domain-containing protein 9
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	24580313 - 24594286 / `-`

ID 对照

NCBI Gene ID	`LOC130993642`
GeneID	`130993642`
locus_tag	`-`
NCBI Name	`LOC130993642`
原始查询	`LOC130993642`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	methyl-CpG-binding domain-containing protein 9
产物	methyl-CpG-binding domain-containing protein 9
Arabidopsis	`AT3G01460` (MBD9) methyl-CPG-binding domain 9 [Source:NCBI gene (formerly Entrezgene);Acc:821132] identity=38.9; qcov=1.04; evalue=0; confidence=medium
Rice	`Os02g0192400` (P0437H03.106) - identity=37.6; qcov=0.915; evalue=0; confidence=medium
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0005634 (nucleus)
KEGG	-
Pfam	PF00439 (Bromodomain); PF00628 (PHD); PF15612 (WHIM1); PF15613 (WSD)
InterPro	-
eggNOG	-
NR	GeneID:130993642

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057774594.1`
2	Chromosome	染色体	0.00000	`XP_057774594.1`
3	Centromere	着丝粒	0.00000	`XP_057774594.1`
4	Chromatin	染色质	0.00000	`XP_057774594.1`
5	Telomere	端粒	0.00000	`XP_057774594.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:24581946`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr7:24582116`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:24582212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C15,C21,D10
`Chr7:24582588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:24582658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B137,C45
`Chr7:24582739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr7:24583242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr7:24584033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr7:24584401`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr7:24584816`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr7:24585978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr7:24586565`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B128,B67,B7,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774594.1

2091 aa

1046

2091

Bromodomain

PHD

WHIM1

WSD

PF00439 Bromodomain 1076-1137 aa PF00628 PHD 1198-1242 aa PF15612 WHIM1 1277-1320 aa PF15613 WSD 1525-1607 aa

XP_057774595.1

2090 aa

1045

2090

Bromodomain

PHD

WHIM1

WSD

PF00439 Bromodomain 1076-1137 aa PF00628 PHD 1198-1242 aa PF15612 WHIM1 1277-1320 aa PF15613 WSD 1524-1606 aa

XP_057774596.1

2080 aa

1040

2080

Bromodomain

PHD

WHIM1

WSD

PF00439 Bromodomain 1065-1126 aa PF00628 PHD 1187-1231 aa PF15612 WHIM1 1266-1309 aa PF15613 WSD 1514-1596 aa

XP_057774597.1

1951 aa

976

1951

Bromodomain

PHD

WHIM1

WSD

PF00439 Bromodomain 936-997 aa PF00628 PHD 1058-1102 aa PF15612 WHIM1 1137-1180 aa PF15613 WSD 1385-1467 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774594.1`	Pfam	`PF00439`	Bromodomain	Domain	1076	1137	4.7e-05	24.0	Bromodomain
`XP_057774594.1`	Pfam	`PF00628`	PHD	Domain	1198	1242	5.2e-12	46.3	PHD-finger
`XP_057774594.1`	Pfam	`PF15612`	WHIM1	Motif	1277	1320	1.3e-06	28.6	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057774594.1`	Pfam	`PF15613`	WSD	Family	1525	1607	1.3e-10	42.0	Williams-Beuren syndrome DDT (WSD), D-TOX E motif
`XP_057774595.1`	Pfam	`PF00439`	Bromodomain	Domain	1076	1137	4.7e-05	24.0	Bromodomain
`XP_057774595.1`	Pfam	`PF00628`	PHD	Domain	1198	1242	5.2e-12	46.3	PHD-finger
`XP_057774595.1`	Pfam	`PF15612`	WHIM1	Motif	1277	1320	1.3e-06	28.6	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057774595.1`	Pfam	`PF15613`	WSD	Family	1524	1606	1.3e-10	42.0	Williams-Beuren syndrome DDT (WSD), D-TOX E motif
`XP_057774596.1`	Pfam	`PF00439`	Bromodomain	Domain	1065	1126	4.7e-05	24.0	Bromodomain
`XP_057774596.1`	Pfam	`PF00628`	PHD	Domain	1187	1231	5.2e-12	46.3	PHD-finger
`XP_057774596.1`	Pfam	`PF15612`	WHIM1	Motif	1266	1309	1.3e-06	28.6	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057774596.1`	Pfam	`PF15613`	WSD	Family	1514	1596	1.3e-10	42.0	Williams-Beuren syndrome DDT (WSD), D-TOX E motif
`XP_057774597.1`	Pfam	`PF00439`	Bromodomain	Domain	936	997	4.3e-05	24.1	Bromodomain
`XP_057774597.1`	Pfam	`PF00628`	PHD	Domain	1058	1102	5.2e-12	46.3	PHD-finger
`XP_057774597.1`	Pfam	`PF15612`	WHIM1	Motif	1137	1180	1.1e-06	28.8	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057774597.1`	Pfam	`PF15613`	WSD	Family	1385	1467	1.3e-10	42.0	Williams-Beuren syndrome DDT (WSD), D-TOX E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057918613.1
GATTTCAAGAATCCCCGCCCGGCACTTCCTCTCTCTCTGTCTCTCTCTATCATCCCCTTCTTTATCTCTCTCTGCAATTTCTCATTTAATTTGACCCAAAAAGTAGGCGTCTTTCGCCTCATTCTCACAGCTCTCCCTGTTGCATACGTTACAAGCGACTGAATTGTGTTTTCTACCAAACAATTCGTCATCACTCGTCGCTCTTCCTTGTCCGCTTTCACCAAATTGATTGCTTTGCTCCTTAACCCCTTCCTGCATCC...

XM_057918612.1
GATTTCAAGAATCCCCGCCCGGCACTTCCTCTCTCTCTGTCTCTCTCTATCATCCCCTTCTTTATCTCTCTCTGCAATTTCTCATTTAATTTGACCCAAAAAGTAGGCGTCTTTCGCCTCATTCTCACAGCTCTCCCTGTTGCATACGTTACAAGCGACTGAATTGTGTTTTCTACCAAACAATTCGTCATCACTCGTCGCTCTTCCTTGTCCGCTTTCACCAAATTGATTGCTTTGCTCCTTAACCCCTTCCTGCATCC...

CDS

4 records

下载 CDS FASTA

LOC130993642
ATGGAAGCTGAAACCAGTAACGCGAAAGGGGGAGCTAAAATGGCGTTTCAAATAGATCTAAACGAGATGCCAATCTCGTCACCCCGGGAAGTAGCCGACGACGCCGTATTGCGAAGCGCTGGTGCTTCTTCCGTCTGTGTGGTGTGCCGGAAAGGGGTTCCGGTCGGGATAGTTCCCGACAAAGTGACGGGAGAGCTGCGCCACGAGAGAAAGTGCTTCCGGTGCTTGCTCAGGAACGATAACGCCGGTGGAGGCGACGC...

Protein

4 records

下载 Protein FASTA

XP_057774594.1
MEAETSNAKGGAKMAFQIDLNEMPISSPREVADDAVLRSAGASSVCVVCRKGVPVGIVPDKVTGELRHERKCFRCLLRNDNAGGGDAGRFDINASPPREAEDGDVITVVAGRDGTGGGRVQAYVHSSFYSHHVNTSKLNPMLDGIGHDLPKTSSIAVDSPYSRFRGALLQKVHSDGILGTIHKESTFAARLRASHTPPEFPPASPNVLYLQTLREYIAERSGTLGEGWRVEFEFCDKEYKTSAVYIAPDGSRFRSMEDVA...

XP_057774595.1
MEAETSNAKGGAKMAFQIDLNEMPISSPREVADDAVLRSAGASSVCVVCRKGVPVGIVPDKVTGELRHERKCFRCLLRNDNAGGGDAGRFDINASPPREAEDGDVITVVAGRDGTGGGRVQAYVHSSFYSHHVNTSKLNPMLDGIGHDLPKTSSIAVDSPYSRFRGALLQKVHSDGILGTIHKESTFAARLRASHTPPEFPPASPNVLYLQTLREYIAERSGTLGEGWRVEFEFCDKEYKTSAVYIAPDGSRFRSMEDVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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