Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G002594`

染色体: Chr07 坐标: 24932200-24943383 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G002594`
名称	SmilChr07G002594
描述	AP-1 complex subunit gamma-2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	24932200 - 24943383 / `+`

ID 对照

NCBI Gene ID	`LOC130993663`
GeneID	`130993663`
locus_tag	`-`
NCBI Name	`LOC130993663`
原始查询	`LOC130993663`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AP-1 complex subunit gamma-2-like
产物	AP-1 complex subunit gamma-2-like
Arabidopsis	`AT1G60070` (AT1G60070) Adaptor protein complex AP-1, gamma subunit [Source:NCBI gene (formerly Entrezgene);Acc:842301] identity=73.8; qcov=1; evalue=0; confidence=high
Rice	`Os06g0167100` - identity=67.8; qcov=1.01; evalue=0; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0006886 (intracellular protein transport); GO:0006896 (Golgi to vacuole transport); GO:0006898 (receptor-mediated endocytosis); GO:0030117 (membrane coat); GO:0030121 (AP-1 adaptor complex); GO:0035615 (clathrin-cargo adaptor activity)
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01602 (Adaptin_N); PF02883 (Alpha_adaptinC2)
InterPro	-
eggNOG	-
NR	GeneID:130993663

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057774633.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.80000	`XP_057774633.1`
3	Clathrin-coated vesicle	Clathrin-coated vesicle	0.80000	`XP_057774633.1`
4	Trans-golgi network	Trans-golgi network	0.80000	`XP_057774633.1`
5	Vesicle	囊泡	0.80000	`XP_057774633.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:24933665`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,C16
`Chr7:24937215`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr7:24939669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,B17,C30
`Chr7:24941278`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B128,B67,B7,C61
`Chr7:24942976`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C18,C39,C42
`Chr7:24942981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774633.1

880 aa

440

880

Adaptin_N

Alpha_adaptinC2

PF01602 Adaptin_N 26-579 aa PF02883 Alpha_adaptinC2 764-877 aa

XP_057774634.1

878 aa

439

878

Adaptin_N

Alpha_adaptinC2

PF01602 Adaptin_N 26-579 aa PF02883 Alpha_adaptinC2 762-875 aa

XP_057774635.1

878 aa

439

878

Adaptin_N

Alpha_adaptinC2

PF01602 Adaptin_N 26-579 aa PF02883 Alpha_adaptinC2 762-875 aa

XP_057774636.1

876 aa

438

876

Adaptin_N

Alpha_adaptinC2

PF01602 Adaptin_N 26-579 aa PF02883 Alpha_adaptinC2 760-873 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774633.1`	Pfam	`PF01602`	Adaptin_N	Repeat	26	579	9.7e-149	497.0	Adaptin N terminal region
`XP_057774633.1`	Pfam	`PF02883`	Alpha_adaptinC2	Domain	764	877	2.3e-33	115.5	Adaptin C-terminal domain
`XP_057774634.1`	Pfam	`PF01602`	Adaptin_N	Repeat	26	579	9.6e-149	497.0	Adaptin N terminal region
`XP_057774634.1`	Pfam	`PF02883`	Alpha_adaptinC2	Domain	762	875	2.3e-33	115.5	Adaptin C-terminal domain
`XP_057774635.1`	Pfam	`PF01602`	Adaptin_N	Repeat	26	579	9.6e-149	497.0	Adaptin N terminal region
`XP_057774635.1`	Pfam	`PF02883`	Alpha_adaptinC2	Domain	762	875	2.3e-33	115.5	Adaptin C-terminal domain
`XP_057774636.1`	Pfam	`PF01602`	Adaptin_N	Repeat	26	579	9.6e-149	497.0	Adaptin N terminal region
`XP_057774636.1`	Pfam	`PF02883`	Alpha_adaptinC2	Domain	760	873	2.3e-33	115.5	Adaptin C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009091733.1
AAGGGAAAAATGAAAGGAACGTTTGTTGTCTAATTTCCTTCTGCATTAAATTGAATAAGTTCATCTGCTATTTTAATAAGAAAATAAGATTTTGACATAATTCTTTCTTCAAATTTAGCAGCTACTCTGGTTTCTTCATTCCCGATTTCCAGATCCAAATACTGAATTCCAGCTTCTCCAGATCTCTGCATTAACTTTCTGTTTCTTTCTGATCGCGCGCGCTTGCAGGAATTTTGCTGCGGCGGTTGAGCCGTTAGGAG...

XM_057918653.1
AAAAGGGAAAAATGAAAGGAACGTTTGTTGTCTAATTTCCTTCTGCATTAAATTGAATAAGTTCATCTGCTATTTTAATAAGAAAATAAGATTTTGACATAATTCTTTCTTCAAATTTAGCAGCTACTCTGGTTTCTTCATTCCCGATTTCCAGATCCAAATACTGAATTCCAGCTTCTCCAGATCTCTGCATTAACTTTCTGTTTCTTTCTGATCGCGCGCGCTTGCAGGAATTTTGCTGCGGCGGTTGAGCCGTTAGG...

CDS

4 records

下载 CDS FASTA

LOC130993663
ATGAATCCATTCTCCTCCGGCACTCGCCTGAGGGACATGATTCGGGCCATACGTGCTTGCAAAACTGCAGCAGAGGAACGTGCTGTTATTAGAAAAGAATGTGCTTCTATTCGAGCTTCTATTAGTGAAAATGACCAAGATTATATGCATCGCAATTTGGCGAAGCTCATGTTCATCCACATGCTTGGTTACCCAACACATTTTGGTCAAATGGAATGTCTAAAATTAATTGCATCTCCAGGATTCCCAGAGAAGAGAAT...

Protein

4 records

下载 Protein FASTA

XP_057774633.1
MNPFSSGTRLRDMIRAIRACKTAAEERAVIRKECASIRASISENDQDYMHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSIKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCTIRIIKKVPDLAENFINAAAALLKEKHHGVLITGAQLCTDMCKVSTEAHEHFRKKCLDGVVKLLRDLANSPYAPEYDISGITDPLLHIRLLKLLHVL...

XP_057774634.1
MNPFSSGTRLRDMIRAIRACKTAAEERAVIRKECASIRASISENDQDYMHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSIKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCTIRIIKKVPDLAENFINAAAALLKEKHHGVLITGAQLCTDMCKVSTEAHEHFRKKCLDGVVKLLRDLANSPYAPEYDISGITDPLLHIRLLKLLHVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器