当前解析结果
SmilChr07G002617| 统一新 Gene ID | SmilChr07G002617 |
|---|---|
| 名称 | SmilChr07G002617 |
| 描述 | nucleolar GTP-binding protein 1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 25266896 - 25270760 / + |
| NCBI Gene ID | LOC130993680 |
|---|---|
| GeneID | 130993680 |
| locus_tag | - |
| NCBI Name | LOC130993680 |
| 原始查询 | LOC130993680 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nucleolar GTP-binding protein 1-like |
| 产物 | nucleolar GTP-binding protein 1-like |
| Arabidopsis | AT1G50920 (AT1G50920)Nucleolar GTP-binding protein [Source:NCBI gene (formerly Entrezgene);Acc:841514] identity=79.1; qcov=1.01; evalue=0; confidence=high |
| Rice | Os07g0110200- identity=75.4; qcov=0.519; evalue=7.49e-151; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005730 (nucleolus); GO:0042273 (ribosomal large subunit biogenesis) |
| KEGG | smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01926 (MMR_HSR1); PF02421 (FeoB_N); PF06858 (NOG1); PF08155 (NOGCT); PF17835 (NOG1_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993680 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057774667.1 |
| 2 | Nucleolus | 核仁 | 1.00000 | XP_057774667.1 |
| 3 | Nucleolar fibrillar center | Nucleolar fibrillar center | 0.40000 | XP_057774667.1 |
| 4 | Nucleolus rim | Nucleolus rim | 0.40000 | XP_057774667.1 |
| 5 | Chromosome | 染色体 | 0.20000 | XP_057774667.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:25267669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:25267750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B132,B5,B62,C79 |
Chr7:25268243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr7:25268405 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr7:25268633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B132,B5,B62,C79 |
Chr7:25268654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C15,C21 |
Chr7:25268762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B37,D9 |
Chr7:25268915 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C50 |
Chr7:25269358 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C50 |
Chr7:25269495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B104,B65,C23,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057774667.1PF17835
NOG1_N 6-165 aa
PF02421
FeoB_N 170-318 aa
PF01926
MMR_HSR1 171-290 aa
PF06858
NOG1 236-292 aa
PF08155
NOGCT 413-466 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774667.1 |
Pfam | PF17835 |
NOG1_N | Domain | 6 | 165 | 7.7e-60 | 202.3 | NOG1 N-terminal helical domain |
XP_057774667.1 |
Pfam | PF02421 |
FeoB_N | Domain | 170 | 318 | 4.1e-10 | 40.1 | Ferrous iron transport protein B |
XP_057774667.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 171 | 290 | 3e-18 | 66.7 | 50S ribosome-binding GTPase |
XP_057774667.1 |
Pfam | PF06858 |
NOG1 | Family | 236 | 292 | 3.1e-25 | 88.4 | Nucleolar GTP-binding protein 1 (NOG1) |
XP_057774667.1 |
Pfam | PF08155 |
NOGCT | Domain | 413 | 466 | 2.6e-27 | 95.3 | NOGCT (NUC087) domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。