Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003584`

染色体: Chr01 坐标: 54416324-54421669 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003584`
名称	SmilChr01G003584
描述	probable inactive receptor kinase At5g10020
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	54416324 - 54421669 / `+`

ID 对照

NCBI Gene ID	`LOC130993684`
GeneID	`130993684`
locus_tag	`-`
NCBI Name	`LOC130993684`
原始查询	`LOC130993684`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inactive receptor kinase At5g10020
产物	probable inactive receptor kinase At5g10020
Arabidopsis	`AT5G10020` (AT5G10020) Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830865] identity=60.5; qcov=0.995; evalue=0; confidence=high
Rice	`Os07g0626500` (OJ1339_F05.125) - identity=54.4; qcov=0.993; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130993684

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057774675.1`
2	Nucleus	细胞核	0.00000	`XP_057774675.1`
3	Chromosome	染色体	0.00000	`XP_057774675.1`
4	Centromere	着丝粒	0.00000	`XP_057774675.1`
5	Chromatin	染色质	0.00000	`XP_057774675.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:54416862`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,C71
`Chr1:54417178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr1:54417296`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B82
`Chr1:54417296`	`GC`	`G`	1bp_deletion	CDS_variant	1	B82
`Chr1:54417298`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B82
`Chr1:54417298`	`TG`	`T`	1bp_deletion	CDS_variant	1	B82
`Chr1:54417353`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B84
`Chr1:54417353`	`GA`	`G`	1bp_deletion	CDS_variant	1	B84
`Chr1:54417596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr1:54419103`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A4,B22,B41,B78,C71
`Chr1:54419286`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:54419315`	`T`	`TA`	1bp_insertion	frameshift_variant	1	B94

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057774675.1

1053 aa

526

1053

LRRNT_2

LRR_6

LRR_1

LRR_4

LRR_6

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

PK_Tyr_Ser-Thr

Pkinase

PF08263 LRRNT_2 25-69 aa PF13516 LRR_6 248-263 aa PF00560 LRR_1 249-266 aa PF12799 LRR_4 249-283 aa PF13516 LRR_6 317-332 aa PF00560 LRR_1 320-341 aa PF00560 LRR_1 387-408 aa PF13855 LRR_8 387-446 aa PF00560 LRR_1 411-431 aa PF13855 LRR_8 469-527 aa PF00560 LRR_1 470-490 aa PF00560 LRR_1 493-514 aa PF00560 LRR_1 517-535 aa PF00560 LRR_1 538-559 aa PF07714 PK_Tyr_Ser-Thr 777-974 aa PF00069 Pkinase 777-978 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057774675.1`	Pfam	`PF08263`	LRRNT_2	Family	25	69	8.3e-06	26.7	Leucine rich repeat N-terminal domain
`XP_057774675.1`	Pfam	`PF13516`	LRR_6	Repeat	248	263	4.7e-14	51.9	Leucine Rich repeat
`XP_057774675.1`	Pfam	`PF00560`	LRR_1	Repeat	249	266	1.3e-40	129.3	Leucine Rich Repeat
`XP_057774675.1`	Pfam	`PF12799`	LRR_4	Repeat	249	283	2.5e-32	110.9	Leucine Rich repeats (2 copies)
`XP_057774675.1`	Pfam	`PF13516`	LRR_6	Repeat	317	332	4.7e-14	51.9	Leucine Rich repeat
`XP_057774675.1`	Pfam	`PF00560`	LRR_1	Repeat	320	341	1.3e-40	129.3	Leucine Rich Repeat
`XP_057774675.1`	Pfam	`PF00560`	LRR_1	Repeat	387	408	1.3e-40	129.3	Leucine Rich Repeat
`XP_057774675.1`	Pfam	`PF13855`	LRR_8	Repeat	387	446	3.7e-27	94.6	Leucine rich repeat
`XP_057774675.1`	Pfam	`PF00560`	LRR_1	Repeat	411	431	1.3e-40	129.3	Leucine Rich Repeat
`XP_057774675.1`	Pfam	`PF13855`	LRR_8	Repeat	469	527	3.7e-27	94.6	Leucine rich repeat
`XP_057774675.1`	Pfam	`PF00560`	LRR_1	Repeat	470	490	1.3e-40	129.3	Leucine Rich Repeat
`XP_057774675.1`	Pfam	`PF00560`	LRR_1	Repeat	493	514	1.3e-40	129.3	Leucine Rich Repeat
`XP_057774675.1`	Pfam	`PF00560`	LRR_1	Repeat	517	535	1.3e-40	129.3	Leucine Rich Repeat
`XP_057774675.1`	Pfam	`PF00560`	LRR_1	Repeat	538	559	1.3e-40	129.3	Leucine Rich Repeat
`XP_057774675.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	777	974	1.1e-22	81.3	Protein tyrosine and serine/threonine kinase
`XP_057774675.1`	Pfam	`PF00069`	Pkinase	Domain	777	978	2.3e-25	90.2	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057918692.1
CAGTATTTCATTTGCACATCAACAGCGAAATTGTTGCAAAAGAGTAGAAAAGAAAACAAATTCCTGAATTCACCAGCGATAAACAAACCAAAAATAAATAAAGAGCAAAAACCCAAAAAATAATTCAGAGACGGCCCCACTGATGGGAATAAAACTTCCATTTTCTTCACCTTTTTTCACCCATTTTCTCACTTACAACTCATTCTCCATATATAAAAACCCTACTCTCTCTCCTCTCTTTCTCTCTCACACACTCAGAG...

CDS

1 records

下载 CDS FASTA

LOC130993684
ATGACTCTCTCTGTGACTTCCCTCCTCGCTCTCTTTCTCCTCCTCCTCCTCCCCCGCCATGGCTCCGCCTCCGAGGACGAAGTCCGATCACTCCTCGAGTTCAGAAAGGGCATCAAATTCGACCCCACTGATAGAATCTTCTCCACTTGGATTTACCCCTCCAACGCCTCCGCCTGCCCAGCCGGCTTCTACGGCGTCGTCTGTGACGCCGCCACCTCCTCTGTCGTCTCCATTGCTCTCGACCGGCTCGGCCTCTCCGG...

Protein

1 records

下载 Protein FASTA

XP_057774675.1
MTLSVTSLLALFLLLLLPRHGSASEDEVRSLLEFRKGIKFDPTDRIFSTWIYPSNASACPAGFYGVVCDAATSSVVSIALDRLGLSGDLKFSTLIPLKSLQNLTLAGNAFTGRLVPTLGVMSSLQVVDLSENQFYGPIPARLTDLWALHFVNFSNNNFSEWFPAGIRNLQQLKVLDLHSNQLEGDVGELIPELRNVEHLDLSRNQFFGSLELSVENVSSLANTVQYINLSGNQLGGRFWGADAMKLFRNLKVLDLGDNEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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