当前解析结果
SmilChr07G002618| 统一新 Gene ID | SmilChr07G002618 |
|---|---|
| 名称 | SmilChr07G002618 |
| 描述 | uncharacterized SmilChr07G002618 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 25271358 - 25272819 / + |
| NCBI Gene ID | LOC130993687 |
|---|---|
| GeneID | 130993687 |
| locus_tag | - |
| NCBI Name | LOC130993687 |
| 原始查询 | LOC130993687 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Putative thiol-disulfide oxidoreductase DCC [Source:NCBI gene (formerly Entrezgene);Acc:10723023]; symbol=AT1G24095; hit=AT1G24095; species=arabidopsis; confidence=high |
| 产物 | Putative thiol-disulfide oxidoreductase DCC [Source:NCBI gene (formerly Entrezgene);Acc:10723023]; symbol=AT1G24095; hit=AT1G24095; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G24095 (AT1G24095)Putative thiol-disulfide oxidoreductase DCC [Source:NCBI gene (formerly Entrezgene);Acc:10723023] identity=66.7; qcov=0.746; evalue=1.21e-75; confidence=high |
| Rice | Os01g0173000- identity=33; qcov=0.427; evalue=7.44e-11; confidence=low |
| GO | GO:0015035 (protein-disulfide reductase activity) |
| KEGG | - |
| Pfam | PF04134 (DCC1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993687 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057774695.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 1.00000 | XP_057774695.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057774695.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057774695.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057774695.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:25271680 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B32,C50 |
Chr7:25272410 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | B37,B58 |
Chr7:25272410 |
A |
AC |
1bp_insertion | CDS_variant | 2 | B37,B58 |
Chr7:25272412 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B37 |
Chr7:25272501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:25272521 |
GA |
G |
1bp_deletion | frameshift_variant | 11 | B108,B113,B140,B36,B72,B91,C14,C65,C67,D10,D6 |
Chr7:25272523 |
A |
AG |
1bp_insertion | frameshift_variant | 11 | B108,B113,B140,B36,B72,B91,C14,C65,C67,D10,D6 |
Chr7:25272560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,C23 |
Chr7:25272561 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr7:25272577 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | A9,D4 |
Chr7:25272577 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774695.1PF04134
DCC1-like 71-182 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774695.1 |
Pfam | PF04134 |
DCC1-like | Family | 71 | 182 | 2.1e-27 | 97.3 | DCC1-like thiol-disulfide oxidoreductase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。