当前解析结果
SmilChr07G002628| 统一新 Gene ID | SmilChr07G002628 |
|---|---|
| 名称 | SmilChr07G002628 |
| 描述 | peroxidase 6-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 25348733 - 25350235 / - |
| NCBI Gene ID | LOC130993695 |
|---|---|
| GeneID | 130993695 |
| locus_tag | - |
| NCBI Name | LOC130993695 |
| 原始查询 | LOC130993695 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase 6-like |
| 产物 | peroxidase 6-like |
| Arabidopsis | AT1G24110 (AT1G24110)Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839023] identity=59.3; qcov=0.854; evalue=1.4e-134; confidence=high |
| Rice | Os02g0741200 (prx31)- identity=57.9; qcov=0.794; evalue=9.94e-125; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993695 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057774704.1 |
| 2 | Secreted | 分泌到胞外 | 0.40000 | XP_057774704.1 |
| 3 | Cell wall | 细胞壁 | 0.20000 | XP_057774704.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057774704.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057774704.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:25349146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B69,C32,C68,D10,D11 |
Chr7:25349439 |
GC |
G |
1bp_deletion | frameshift_variant | 2 | B54,C58 |
Chr7:25349439 |
GC |
G |
1bp_deletion | CDS_variant | 2 | B54,C58 |
Chr7:25349578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr7:25349651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B90,B92,C21 |
Chr7:25349677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr7:25349711 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr7:25349972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A22,B103 |
Chr7:25350015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B96 |
Chr7:25350025 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr7:25350075 |
GA |
G |
1bp_deletion | frameshift_variant | 8 | B104,B117,B21,B35,B68,C26,C48,C62 |
Chr7:25350153 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B91 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057774704.1PF00141
peroxidase 92-342 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057774704.1 |
Pfam | PF00141 |
peroxidase | Domain | 92 | 342 | 1.8e-77 | 261.0 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。